Name: Sphingobium xanthum NL9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131277

Type strain:

Species: Sphingobium xanthum

Strain Designation: NL9

Culture col. no.: DSM 100901, ATCC 51296, LMG 12560

Strain history: <- LMG <- K. N. Jochimsen, Department of Plant Pathology, University of Florida; NL9

NCBI tax ID(s): 1387165 (species)

SI-ID 7191

LMG 12560, ATCC 51296, DSM 100901

Section

Sphingobium xanthum NL9 is a mesophilic plant pathogen that was isolated from soil.

mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	**Sphingobium xanthum**
	Full Scientific Name (LPSN)	Sphingobium xanthum Francis et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22504]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22504]

Culture medium growth

[Ref.: #22504]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22504]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22504]			growth	28 °C

[Ref.: #22504]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22504]	Sample type/isolated from	soil
[Ref.: #22504]	Geographic location (country and/or sea, region)	Maasland
[Ref.: #22504]	Country	Netherlands
[Ref.: #22504]	Country ISO 3 Code	NLD
[Ref.: #22504]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22504]	Pathogenicity (plant)	yes
[Ref.: #22504]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22504]	Sphingobium xanthum strain NL9 16S ribosomal RNA gene, partial sequence	KF437579	1453	ENA	1387165 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobium xanthum NL9	GCA_019737615	contig	GenBank	1387165 tax ID	*
[Ref.: #66792]	Sphingobium xanthum DSM 100901	2828427071	draft	JGI IMG/M	1387165 tax ID	*

Availability in culture collections External links

[Ref.: #22504]

Culture collection no.

DSM 100901, ATCC 51296, LMG 12560

[Ref.: #89721]

SI-ID 7191

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of rhizosphere bacteria including strains causing corky root of lettuce and proposal of Rhizorhapis suberifaciens gen. nov., comb. nov., Sphingobium mellinum sp. nov., Sphingobium xanthum sp. nov. and Rhizorhabdus argentea gen. nov., sp. nov.	Francis IM, Jochimsen KN, De Vos P, van Bruggen AHC	Int J Syst Evol Microbiol	10.1099/ijs.0.058909-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22504

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100901

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89721

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7191.1 )

* These data were automatically processed and therefore are not curated

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