Name: Ramlibacter solisilvae 5-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131279

Type strain:

Species: Ramlibacter solisilvae

Strain Designation: 5-10

Culture col. no.: DSM 29042, JCM 19319, KACC 17567, LMG 30470

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; 5-10.

NCBI tax ID(s): 1349425 (species)

SI-ID 407258

DSM 29042

Section

Ramlibacter solisilvae 5-10 is a mesophilic, Gram-negative bacterium that was isolated from forest soil.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Ramlibacter*
	Species	**Ramlibacter solisilvae**
	Full Scientific Name (LPSN)	Ramlibacter solisilvae Lee et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

Multimedia content

[Ref.: #22506]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22506]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #22506]

Culture medium growth

[Ref.: #22506]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22506]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22506]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #22506]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22506]	Sample type/isolated from	forest soil
[Ref.: #22506]	Geographic location (country and/or sea, region)	Bac Kan Province
[Ref.: #22506]	Country	Vietnam
[Ref.: #22506]	Country ISO 3 Code	VNM
[Ref.: #22506]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Forest soil (less than 4 cm in depth) of Bac Kan Province
[Ref.: #67770]	Country	Vietnam
[Ref.: #67770]	Country ISO 3 Code	VNM
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC569791 (>99% sequence identity) for Variovorax from Microbeatlas

Aquatic Samples	1907
Soil Samples	458
Animal Samples	114
Plant Samples	69
Total Samples	2548

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22506]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22506]	Ramlibacter solisilvae strain 5-10 16S ribosomal RNA gene, partial sequence	KC569791	1457	ENA	1349425 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ramlibacter tataouinensis strain 5-10	94132.7	complete	PATRIC	94132 tax ID	*

[Ref.: #22506]

GC-content

69.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ramlibacter tataouinensis strain 5-10 PATRIC: 94132.7
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ramlibacter tataouinensis strain 5-10 PATRIC: 94132.7
[Ref.: #69480]	motile	yes	57.628	no
[Ref.: #69480]	flagellated	no	63.869	no
[Ref.: #69480]	gram-positive	no	98.567	no
[Ref.: #69480]	anaerobic	no	98.41	no
[Ref.: #69480]	halophile	no	96.494	no
[Ref.: #69480]	spore-forming	no	94.773	no
[Ref.: #69480]	glucose-util	no	62.759	no
[Ref.: #69480]	aerobic	yes	85.465	no
[Ref.: #69480]	glucose-ferment	no	89.453	no
[Ref.: #69480]	thermophile	no	96.238	no

Availability in culture collections External links

[Ref.: #22506]

Culture collection no.

DSM 29042, JCM 19319, KACC 17567, LMG 30470

[Ref.: #89723]

SI-ID 407258

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caenimonas soli sp. nov., isolated from soil.	Dahal RH, Lee H, Chaudhary DK, Kim DY, Son J, Kim J, Ka JO, Kim DU	Arch Microbiol	10.1007/s00203-020-02110-8	2020	*
Phylogeny	Ramlibacter pinisoli sp. nov., a novel bacterial species isolated from pine garden soil.	Akter S, N A M K, Lee SY, Moon SK, Choi C, Balusamy SR, Siddiqi MZ, Ashrafudoulla M, Rahman MS, Huq MA	Int J Syst Evol Microbiol	10.1099/ijsem.0.004486	2020	*
Phylogeny	Ramlibacter humi sp. nov., isolated from tropical forest soil.	Zhang XJ, Feng GD, Yao Q, Wang YH, Yang SZ, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003641	2019	*
Phylogeny	Ramlibacter monticola sp. nov., isolated from forest soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002314	2017	*
Phylogeny	Ramlibacter rhizophilus sp. nov., isolated from rhizosphere soil of national flower Mugunghwa from South Korea.	Yan ZF, Trinh H, Moya G, Lin P, Li CT, Kook M, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002191	2017	*
Phylogeny	Ramlibacter solisilvae sp. nov., isolated from forest soil, and emended description of the genus Ramlibacter.	Lee HJ, Lee SH, Lee SS, Lee JS, Kim Y, Kim SC, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.058396-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22506

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29042

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89723

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407258.1 )

* These data were automatically processed and therefore are not curated

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Ramlibacter tataouinensis strain 5-10

Ramlibacter tataouinensis strain 5-10

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