Name: Streptomyces lonarensis DSM 42084
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131025

Type strain:

Species: Streptomyces lonarensis

Culture col. no.: DSM 42084, KCTC 39684, MTCC 11708, NCL 716

Strain history: <- L. Sunil Kumar, National Chemical Laboratory, Pune, India; NCL 716 <- M.C. Srinivasan and M. Rele

NCBI tax ID(s): 700599 (species)

SI-ID 402056

DSM 42084

Special Collections

Section

Streptomyces lonarensis DSM 42084 is a bacterium that builds an aerial mycelium and was isolated from soil from an alkaline salt water meteorite lake.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lonarensis**
	Full Scientific Name (LPSN)	Streptomyces lonarensis Sharma et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.057

[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #69477]	Colony color	Colourless
[Ref.: #69477]	Cultivation medium used	ISP 2

[Ref.: #69477]	Colony color	Colourless
[Ref.: #69477]	Cultivation medium used	ISP 4

[Ref.: #69477]	Colony color	Colourless
[Ref.: #69477]	Cultivation medium used	ISP 6

[Ref.: #69477]	Colony color	Colourless
[Ref.: #69477]	Cultivation medium used	ISP 7

[Ref.: #69477]	Colony color	Ivory (1014)
[Ref.: #69477]	Cultivation medium used	suter with tyrosine

[Ref.: #69477]	Colony color	Light ivory (1015)
[Ref.: #69477]	Cultivation medium used	ISP 3

[Ref.: #69477]	Colony color	Light ivory (1015)
[Ref.: #69477]	Cultivation medium used	ISP 5

[Ref.: #69477]	Colony color	Light ivory (1015)
[Ref.: #69477]	Cultivation medium used	suter without tyrosine

[Ref.: #69477]	Pigment production	yes
[Ref.: #69477]	Pigment name	Melanin
[Ref.: #69477]	Pigment production	yes
[Ref.: #69477]	Pigmentation color	Ivory (1014), sand yellow (1002), ocher brown (8001)
[Ref.: #69477]	Pigment name	soluble pigment

[Ref.: #69477]	Multicellular complex forming ability	no
[Ref.: #69477]	Multicellular complex name	Aerial mycelium
[Ref.: #69477]	Medium Name (multicellularity)	ISP 2

[Ref.: #69477]	Multicellular complex forming ability	no
[Ref.: #69477]	Multicellular complex name	Aerial mycelium
[Ref.: #69477]	Medium Name (multicellularity)	ISP 3

[Ref.: #69477]	Multicellular complex forming ability	yes
[Ref.: #69477]	Multicellular complex name	Aerial mycelium
[Ref.: #69477]	Multicellular complex color	Oyster white (1013)
[Ref.: #69477]	Medium Name (multicellularity)	ISP 4

[Ref.: #69477]	Multicellular complex forming ability	yes
[Ref.: #69477]	Multicellular complex name	Aerial mycelium
[Ref.: #69477]	Multicellular complex color	Traffic white (9016)
[Ref.: #69477]	Medium Name (multicellularity)	ISP 5

[Ref.: #69477]	Multicellular complex forming ability	yes
[Ref.: #69477]	Multicellular complex name	Aerial mycelium
[Ref.: #69477]	Multicellular complex color	Oyster white (1013)
[Ref.: #69477]	Medium Name (multicellularity)	ISP 6

[Ref.: #69477]	Multicellular complex forming ability	yes
[Ref.: #69477]	Multicellular complex name	Aerial mycelium
[Ref.: #69477]	Multicellular complex color	Signal white (9003)
[Ref.: #69477]	Medium Name (multicellularity)	ISP 7

[Ref.: #69477]	Multicellular complex forming ability	no
[Ref.: #69477]	Multicellular complex name	Aerial mycelium
[Ref.: #69477]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69477]	Multicellular complex forming ability	no
[Ref.: #69477]	Multicellular complex name	Aerial mycelium
[Ref.: #69477]	Medium Name (multicellularity)	suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22317]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #22317]

Culture medium growth

[Ref.: #22317]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22317]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22317]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69477]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69477]	arabinose ChEBI	+	growth
[Ref.: #69477]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69477]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69477]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69477]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69477]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69477]	raffinose ChEBI	-	growth
[Ref.: #69477]	rhamnose ChEBI	+/-	growth
[Ref.: #69477]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69477]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69477]	3970	-	-	-	+	-	-	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69477]	6154	not determinedn.d.	+	+/-	+/-	+/-	+	+/-	+/-	-	-	+	+/-	-	+/-	-	+	-	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22317]	Sample type/isolated from	soil from an alkaline salt water meteorite lake
[Ref.: #22317]	Geographic location (country and/or sea, region)	Maharashtra State, Buldhana district, Lonar Lake (19° 58' N 76° 31' E)
[Ref.: #22317]	Country	India
[Ref.: #22317]	Country ISO 3 Code	IND
[Ref.: #22317]	Continent	Asia
[Ref.: #22317]	Geographic location	19.9667°/76.5167°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22317]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22317]	Streptomyces lonarensis strain NCL 716 16S ribosomal RNA gene, partial sequence	FJ919811	1527	GenBank ENA	700599 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces lonarensis strain NCL716	700599.4	wgs	PATRIC	700599 tax ID	*

[Ref.: #22317]

GC-content

71.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces lonarensis strain NCL716 PATRIC: 700599.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.057	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.144	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.163	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.393	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.761	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #22317]

Culture collection no.

DSM 42084, KCTC 39684, MTCC 11708, NCL 716

[Ref.: #89496]

SI-ID 402056

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Streptomyces sp. Strain ventii, Isolated from a Microbial Mat near Hydrothermal Vents within the Axial Seamount in the Pacific Ocean, and Resequencing of the Type Strains Streptomyces lonarensis NCL 716 and Streptomyces bohaiensis 11A07.	Loughran RM, Mitchell EA, Vining OB, Gallegos DA, Deadmond MC, Wasson BJ, Pfannmuller KM, Paddock BE, Koyack MJ, Oline DK, Ushijima B, Saw JH, McPhail KL, Videau P	Microbiol Resour Announc	10.1128/MRA.00607-20	2020	*
Phylogeny	Streptomyces otsuchiensis sp. nov., a biosurfactant-producing actinobacterium isolated from marine sediment.	Terahara T, Naemura T, Nampo Y, Kobayashi T, Imada C, Hamada M, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003638	2019	*
Phylogeny	Streptomyces lonarensis sp. nov., isolated from Lonar Lake, a meteorite salt water lake in India.	Sharma TK, Mawlankar R, Sonalkar VV, Shinde VK, Zhan J, Li WJ, Rele MV, Dastager SG, Kumar LS	Antonie Van Leeuwenhoek	10.1007/s10482-015-0626-9	2015	*
Phylogeny	Streptomyces spiramenti sp. nov., isolated from a deep-sea microbial mat.	Loughran RM, Diefendorf CM, Reill-VanSise JR, Mitchell EA, Vining OB, Gallegos DA, Miller G, Koyack MJ, Oline DK, Rivers OS, Ushijima B, Saw JH, Gaylor MO, McPhail KL, Videau P	Arch Microbiol	10.1007/s00203-022-03326-6	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22317

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42084

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69477

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89496

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402056.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces lonarensis strain NCL716

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