Name: Staphylococcus xylosus 33-ERD13C
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131024

Type strain:

Species: Staphylococcus xylosus

Strain Designation: 33-ERD13C

Culture col. no.: DSM 28566

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; 33-ERD13C

NCBI tax ID(s): 1288 (species)

SI-ID 404950

DSM 28566

Other strains from Staphylococcus xylosus

S. xylosus KL 162, KL62, CCUG 7324, NCTC 11043, ... (type strain)
S. xylosus LRA 1641 575, LRA 164 15 75, DSM ...
S. xylosus SL 8, DSM 20267
S. xylosus AmMS 151, CIP 104065, ATCC 49148, ...
S. xylosus CCUG 4314, NCTC 10517
S. xylosus CCUG 32025
S. xylosus CCUG 35374
S. xylosus CCUG 51763
S. xylosus G2B1, DSM 26538

Section

Staphylococcus xylosus 33-ERD13C is a mesophilic human pathogen that was isolated from caecal content; TNF^deltaARE/+ C57BL/6 mouse.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus xylosus**
	Full Scientific Name (LPSN)	Staphylococcus xylosus Schleifer and Kloos 1975 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #22316]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22316]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #22316]

Culture medium growth

[Ref.: #22316]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22316]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22316]			growth	37 °C

[Ref.: #22316]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arginine ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannitol ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	lactose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	sucrose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	trehalose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	+	hydrolysis	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic resistance	Concentration
[Ref.: #68375]		novobiocin ChEBI	yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite	Production
[Ref.: #68375]		acetoin ChEBI	yes	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68375]		acetoin ChEBI	+	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68375]	alkaline phosphatase	+	3.1.3.1	* from API ID32STA
[Ref.: #68375]	arginine dihydrolase	-	3.5.3.6	* from API ID32STA
[Ref.: #68375]	beta-galactosidase	+	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	+	3.2.1.31	* from API ID32STA
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #68375]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API ID32STA
[Ref.: #68375]	urease	+	3.5.1.5	* from API ID32STA

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #22316]	6167	+	-	-	-	+	+	+	+	+	+	+	-	-	-	+	+	+	-	+	+	+	+	+	+/-	+	+
[Ref.: #22316]	6348	+	-	-	-	+	+	+	+	+	+	+	-	-	-	+	+	+	-	+	+	+	+	+	-	+/-	+
[Ref.: #22316]	6349	+	-	-	-	+	+	+	+	+	+	+	-	-	-	+	+	+	-	+	+	+	+	+	+/-	+	+
[Ref.: #22316]	6350	+	-	-	-	+	+	+	+	+	+	+	-	-	-	+	+	+	+/-	+	+	+	+	+	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22316]	Sample type/isolated from	caecal content; TNF^deltaARE/+ C57BL/6 mouse
[Ref.: #22316]	Geographic location (country and/or sea, region)	Freising
[Ref.: #22316]	Country	Germany
[Ref.: #22316]	Country ISO 3 Code	DEU
[Ref.: #22316]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR364788 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	1554
Soil Samples	930
Animal Samples	23674
Plant Samples	763
Total Samples	26921

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22316]	Pathogenicity (human)	yes, in single cases
[Ref.: #22316]	Pathogenicity (animal)	yes, in single cases
[Ref.: #22316]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22316]	Staphylococcus sp. ERD13C 16S ribosomal RNA gene, partial sequence	KR364788	1445	ENA	1796649 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus xylosus DSM 28566	GCA_024621885	contig	GenBank	1288 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus xylosus DSM 28566 NCBI: GCA_024621885.1
[Ref.: #69480]	flagellated	no	89.966	no
[Ref.: #69480]	gram-positive	yes	91.245	no
[Ref.: #69480]	anaerobic	no	99.197	no
[Ref.: #69480]	aerobic	yes	91.868	no
[Ref.: #69480]	halophile	yes	95.972	no
[Ref.: #69480]	spore-forming	no	91.515	no
[Ref.: #69480]	motile	no	89.419	no
[Ref.: #69480]	glucose-ferment	yes	83.94	no
[Ref.: #69480]	thermophile	no	99.827	yes
[Ref.: #69480]	glucose-util	yes	89.768	no

Availability in culture collections External links

[Ref.: #22316]

Culture collection no.

DSM 28566

[Ref.: #89495]

SI-ID 404950

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22316

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28566

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89495

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404950.1 )

* These data were automatically processed and therefore are not curated

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Staphylococcus xylosus DSM 28566

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