Name: Chitinivibrio alkaliphilus ACht1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130839

Type strain:

Species: Chitinivibrio alkaliphilus

Strain Designation: ACht1

Culture col. no.: DSM 24538, UNIQEM U887

Strain history: <- D. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; ACht1 <- D. Y. Sorokin, Winogradsky Inst. Microbiol., RAS, Moscow, Russia

NCBI tax ID(s): 1505232 (species)

SI-ID 405592

DSM 24538

Special Collections

DSMZ

Other strains from Chitinivibrio alkaliphilus

Section

Chitinivibrio alkaliphilus ACht1 is an anaerobe bacterium that was isolated from hypersaline soda lake sediments.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Fibrobacterota*
	Class	*Chitinivibrionia*
	Order	*Chitinivibrionales*
	Family	*Chitinivibrionaceae*
	Genus	*Chitinivibrio*
	Species	**Chitinivibrio alkaliphilus**
	Full Scientific Name (LPSN)	Chitinivibrio alkaliphilus Sorokin et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #22118]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22118]

Culture medium

CHITINIVIBRIO MEDIUM (DSMZ Medium 1464)

[Ref.: #22118]

Culture medium growth

[Ref.: #22118]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22118]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22118]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22118]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22118]	Sample type/isolated from	hypersaline soda lake sediments
[Ref.: #22118]	Geographic location (country and/or sea, region)	Southwest Siberia, Altai region
[Ref.: #22118]	Country	Russia
[Ref.: #22118]	Country ISO 3 Code	RUS
[Ref.: #22118]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Alkaline	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF304641 (>99% sequence identity) for Chitinivibrio alkaliphilus subclade from Microbeatlas

Aquatic Samples	255
Soil Samples	12
Animal Samples	10
Plant Samples
Total Samples	277

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22118]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22118]	Chitinivibrio alkaliphilus ACht1 16S ribosomal RNA gene, partial sequence	JF304641	1488	GenBank ENA	1313304 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chitinivibrio alkaliphilus ACht1	GCA_000474745	contig	GenBank ENA	1313304 tax ID	*
[Ref.: #66792]	Chitinivibrio alkaliphilus ACht1	2565956826	draft	JGI IMG/M	1313304 tax ID	*

[Ref.: #22118]

GC-content

46 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #22118]

Culture collection no.

DSM 24538, UNIQEM U887

[Ref.: #89326]

SI-ID 405592

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3.	Sorokin DY, Gumerov VM, Rakitin AL, Beletsky AV, Damste JS, Muyzer G, Mardanov AV, Ravin NV	Environ Microbiol	10.1111/1462-2920.12284	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22118

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24538

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89326

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405592.1 )

* These data were automatically processed and therefore are not curated

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