Labilithrix luteola (DSM 27648, NBRC 109946, B00002)

Multimedia

• @ref:	22116
  multimedia content:	DSM_27648.jpg
  multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_27648.jpg
  intellectual property rights:	© Leibniz-Institut DSMZ
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
22116	NB-PYRUVATE AGAR (DSMZ Medium 1509)		Medium recipe at MediaDive	Name: NB-PYRUVATE AGAR (DSMZ Medium 1509) Composition: Agar 14.0 g/l Nutrient broth 6.0 g/l NaCl 1.5 g/l Na-pyruvate 1.0 g/l Distilled water
22116	VY/2 AGAR (DSMZ Medium 9)		Medium recipe at MediaDive	Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
22116	CY-AGAR (DSMZ Medium 67)		Medium recipe at MediaDive	Name: CY-AGAR (DSMZ Medium 67) Composition: Agar 15.0 g/l Casitone 3.0 g/l CaCl2 x 2 H2O 1.36 g/l Yeast extract 1.0 g/l Distilled water

Culture temp

Oxygen tolerance

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	acetoin degradation	100	3 of 3
66794	starch degradation	100	10 of 10
66794	glycine betaine biosynthesis	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	sulfopterin metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	hydrogen production	100	5 of 5
66794	cyanate degradation	100	3 of 3
66794	ceramide biosynthesis	100	1 of 1
66794	isoleucine metabolism	100	8 of 8
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	ethanol fermentation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	kanosamine biosynthesis II	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	palmitate biosynthesis	95.45	21 of 22
66794	heme metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	alanine metabolism	89.66	26 of 29
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	glycolysis	88.24	15 of 17
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	lysine metabolism	85.71	36 of 42
66794	photosynthesis	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	tyrosine metabolism	85.71	12 of 14
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	NAD metabolism	83.33	15 of 18
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	pentose phosphate pathway	81.82	9 of 11
66794	tryptophan metabolism	81.58	31 of 38
66794	glycogen metabolism	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	vitamin K metabolism	80	4 of 5
66794	purine metabolism	79.79	75 of 94
66794	histidine metabolism	79.31	23 of 29
66794	citric acid cycle	78.57	11 of 14
66794	glutathione metabolism	78.57	11 of 14
66794	lipid A biosynthesis	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	urea cycle	76.92	10 of 13
66794	pyrimidine metabolism	75.56	34 of 45
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	catecholamine biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	arginine metabolism	75	18 of 24
66794	methionine metabolism	73.08	19 of 26
66794	vitamin B6 metabolism	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	oxidative phosphorylation	65.93	60 of 91
66794	polyamine pathway	65.22	15 of 23
66794	proline metabolism	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	cellulose degradation	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	benzoyl-CoA degradation	57.14	4 of 7
66794	allantoin degradation	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	phenol degradation	55	11 of 20
66794	d-xylose degradation	54.55	6 of 11
66794	cholesterol biosynthesis	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	bile acid biosynthesis, neutral pathway	52.94	9 of 17
66794	cyclohexanol degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	lactate fermentation	50	2 of 4
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	denitrification	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	carnitine metabolism	50	4 of 8
66794	selenocysteine biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	androgen and estrogen metabolism	50	8 of 16
66794	sphingosine metabolism	50	3 of 6
66794	degradation of pentoses	46.43	13 of 28
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	ascorbate metabolism	45.45	10 of 22
66794	arachidonic acid metabolism	44.44	8 of 18
66794	mevalonate metabolism	42.86	3 of 7
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	carotenoid biosynthesis	40.91	9 of 22
66794	O-antigen biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	IAA biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	enterobactin biosynthesis	33.33	1 of 3
66794	degradation of sugar acids	28	7 of 25
66794	vitamin B12 metabolism	26.47	9 of 34
66794	alginate biosynthesis	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	chlorophyll metabolism	22.22	4 of 18
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation source categories

Isolation

Taxonmaps

69479

Global distribution of 16S sequence AB847449 (>99% sequence identity) for Labilithrix luteola subclade from Microbeatlas

Aquatic Samples	35
Soil Samples	845
Animal Samples	55
Plant Samples	65
Total Samples	1000

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Labilithrix luteola strain DSM 27648	complete		1391654.11		1391654	95.63
66792	ASM126320v1 assembly for Labilithrix luteola DSM 27648	complete	GCA_001263205	1391654.13	2645727571	1391654	92.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22116	Labilithrix luteola gene for 16S ribosomal RNA, partial sequence	AB847449	1483		1391654

GC content

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes.	Wu YW.	BMC Genomics	10.1186/s12864-017-4327-9	2018
Metabolism	Genetic manipulation and tools in myxobacteria for the exploitation of secondary metabolism.	Yue X, Sheng D, Zhuo L, Li YZ.	Eng Microbiol	10.1016/j.engmic.2023.100075	2023
Phylogeny	Comparative Genomics of Myxobacterial Chemosensory Systems.	Sharma G, Khatri I, Subramanian S.	J Bacteriol	10.1128/jb.00620-17	2018
	Sterol Synthesis in Diverse Bacteria.	Wei JH, Yin X, Welander PV.	Front Microbiol	10.3389/fmicb.2016.00990	2016
Metabolism	Six Heterocyclic Metabolites from the Myxobacterium Labilithrix luteola.	Mulwa LS, Jansen R, Praditya DF, Mohr KI, Wink J, Steinmann E, Stadler M	Molecules	10.3390/molecules23030542	2018
Phylogeny	Vulgatibacter incomptus gen. nov., sp. nov. and Labilithrix luteola gen. nov., sp. nov., two myxobacteria isolated from soil in Yakushima Island, and the description of Vulgatibacteraceae fam. nov., Labilitrichaceae fam. nov. and Anaeromyxobacteraceae fam. nov.	Yamamoto E, Muramatsu H, Nagai K	Int J Syst Evol Microbiol	10.1099/ijs.0.063198-0	2014