Archive BacDiveID:10.13145/bacdive130839.20240510.9

Strain identifier

BacDive ID: 130839

Type strain:

Species: Chitinivibrio alkaliphilus

Strain Designation: ACht1

Strain history: <- D. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; ACht1 <- D. Y. Sorokin, Winogradsky Inst. Microbiol., RAS, Moscow, Russia

NCBI tax ID(s): 1505232 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 22118

BacDive-ID: 130839

DSM-Number: 24538

keywords: genome sequence, 16S sequence, Bacteria, anaerobe

description: Chitinivibrio alkaliphilus ACht1 is an anaerobe bacterium that was isolated from hypersaline soda lake sediments.

NCBI tax id

NCBI tax id: 1505232
Matching level: species

strain history

@ref: 22118
history: <- D. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; ACht1 <- D. Y. Sorokin, Winogradsky Inst. Microbiol., RAS, Moscow, Russia

doi: 10.13145/bacdive130839.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/fibrobacterota
domain: Bacteria
phylum: Fibrobacterota
class: Chitinivibrionia
order: Chitinivibrionales
family: Chitinivibrionaceae
genus: Chitinivibrio
species: Chitinivibrio alkaliphilus
full scientific name: Chitinivibrio alkaliphilus Sorokin et al. 2014

@ref: 22118

domain: Bacteria

phylum: Fibrobacteres

class: Chitinivibrionia

order: Chitinivibrionaceae, not assigned to order

family: Chitinivibrionaceae

genus: Chitinivibrio

species: Chitinivibrio alkaliphilus

full scientific name: Chitinivibrio alkaliphilus Sorokin et al. 2014

strain designation: ACht1

type strain: yes

Morphology

colony morphology

@ref: 22118
incubation period: 2-3 days

Culture and growth conditions

culture medium

@ref: 22118
name: CHITINIVIBRIO MEDIUM (DSMZ Medium 1464)
growth: yes
link: https://mediadive.dsmz.de/medium/1464
composition: Name: CHITINIVIBRIO MEDIUM (DSMZ Medium 1464) Composition: Na2CO3 95.0 g/l NaHCO3 15.0 g/l NaCl 6.0 g/l Chitin 1.5 g/l K2HPO4 1.0 g/l NH4Cl 0.21396 g/l MgSO4 0.12037 g/l Na2S 0.07906 g/l Yeast extract 0.02 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Pyridoxine 3.33333e-05 g/l MnCl2 3e-05 g/l NiCl2 x 2 H2O 2e-05 g/l None 2e-05 g/l Na2MoO4 x 2 H2O 2e-05 g/l Thiamin 1.66667e-05 g/l Calcium pantothenate 1.66667e-05 g/l PABA 1.66667e-05 g/l Nicotinic acid 1.66667e-05 g/l Riboflavin 1.66667e-05 g/l CuCl2 1e-05 g/l Folic acid 6.66667e-06 g/l Biotin 6.66667e-06 g/l B12 1.66667e-06 g/l Distilled water

culture temp

@ref: 22118
growth: positive
type: growth
temperature: 30

Physiology and metabolism

oxygen tolerance

@ref: 22118
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref: 22118
sample type: hypersaline soda lake sediments
geographic location: Southwest Siberia, Altai region
country: Russia
origin.country: RUS
continent: Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Alkaline
#Condition	#Saline

taxonmaps

@ref: 69479
File name: preview.99_72.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16590;96_58;97_61;98_66;99_72&stattab=map
Last taxonomy: Chitinivibrio alkaliphilus subclade
16S sequence: JF304641
Sequence Identity:
Total samples: 277
soil counts: 12
aquatic counts: 255
animal counts: 10

Safety information

risk assessment

@ref: 22118
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 22118
description: Chitinivibrio alkaliphilus ACht1 16S ribosomal RNA gene, partial sequence
accession: JF304641
length: 1488
database: nuccore
NCBI tax ID: 1313304

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Chitinivibrio alkaliphilus ACht1	GCA_000474745	contig	ncbi	1313304
66792	Chitinivibrio alkaliphilus ACht1	2565956826	draft	img	1313304

GC content

@ref: 22118
GC-content: 46
method: sequence analysis

External links

@ref: 22118

culture collection no.: DSM 24538, UNIQEM U887

straininfo link

@ref: 89326
straininfo: 405592

literature

topic: Phylogeny
Pubmed-ID: 24112708
title: Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3.
authors: Sorokin DY, Gumerov VM, Rakitin AL, Beletsky AV, Damste JS, Muyzer G, Mardanov AV, Ravin NV
journal: Environ Microbiol
DOI: 10.1111/1462-2920.12284
year: 2013
mesh: Anaerobiosis, Animals, Base Sequence, Chitin/metabolism, Fibrobacteres/classification/cytology/*genetics, *Genome, Bacterial, Hydrogen-Ion Concentration, Isoptera/microbiology, Molecular Typing, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
topic2: Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
22118	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-24538	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24538)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
89326	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID405592.1