Name: Streptobacillus hongkongensis HKU33
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130808

Type strain:

Species: Streptobacillus hongkongensis

Strain Designation: HKU33

Culture col. no.: DSM 26322, JCM 18691, NCTC 13659

Strain history: P. C. Y. Woo HKU33.

NCBI tax ID(s): 1162717 (species)

SI-ID 406157

DSM 26322

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Streptobacillus hongkongensis HKU33 is a mesophilic bacterium that was isolated from pus from the peritonsillar abscess of a patient with quinsy.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Fusobacteriota*
	Class	*Fusobacteriia*
	Order	*Fusobacteriales*
	Family	*Leptotrichiaceae*
	Genus	*Streptobacillus*
	Species	**Streptobacillus hongkongensis**
	Full Scientific Name (LPSN)	Streptobacillus hongkongensis Woo et al. 2014

Synonym

Pseudostreptobacillus hongkongensis

Information on morphological and physiological properties Morphology

[Ref.: #21820]	Type of hemolysis	gamma
[Ref.: #21820]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21820]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #21820]

Culture medium growth

[Ref.: #21820]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21820]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21820]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	arginine ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	hippurate ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	lactose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68377]	maltose ChEBI	+	builds acid from	* from API NH
[Ref.: #68381]	maltose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sucrose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	trehalose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68381]		acetoin ChEBI	no	* from API rID32STR
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68381]		acetoin ChEBI	-		* from API rID32STR
[Ref.: #68377]		indole ChEBI		-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	-		* from API rID32STR
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API rID32STR
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym, API rID32STR
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68381]	arginine dihydrolase	-	3.5.3.6	* from API rID32STR
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR, API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API rID32STR
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32STR
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #21820]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #21820]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68381]	glycyl tryptophan arylamidase	-		* from API rID32STR
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68377]	lipase	+		* from API NH
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API rID32STR
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #21820]	6893	+	+	+	+	-	-	+	+	-	+	-	-	-
[Ref.: #21820]	6571	-	+	+	+	+	-	-	+	+	-	+	+	-
[Ref.: #21820]	6293	-	+	+	+	+	-	-	+	+	-	+	-	-

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #21820]	11362	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21820]	14393	-	+	-	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21820]	Sample type/isolated from	pus from the peritonsillar abscess of a patient with quinsy
[Ref.: #21820]	Geographic location (country and/or sea, region)	Queen Mary Hospital
[Ref.: #21820]	Country	Hong Kong
[Ref.: #21820]	Country ISO 3 Code	HKG
[Ref.: #21820]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Pus aspirated from the right peritonsillar abscess of a patient with quinsy
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hong Kong
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Mouth
#Host Body-Site	#Other	#Abscess
#Host Body Product	#Fluids	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ087389 (>99% sequence identity) for Streptobacillus hongkongensis subclade from Microbeatlas

Aquatic Samples	232
Soil Samples	59
Animal Samples	4964
Plant Samples	8
Total Samples	5263

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21820]	Pseudostreptobacillus hongkongensis strain HKU33 16S ribosomal RNA gene, complete sequence	JQ087389	1505	GenBank ENA	1162717 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudostreptobacillus hongkongensis DSM 26322	GCA_001559795	scaffold	GenBank ENA	1162717 tax ID
[Ref.: #66792]	Streptobacillus hongkongensis strain DSM 26322	1162717.3	wgs	PATRIC	1162717 tax ID	*
[Ref.: #66792]	Streptobacillus hongkongensis DSM 26322	2724679071	draft	JGI IMG/M	1162717 tax ID	*

[Ref.: #21820]	GC-content	26.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	26 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptobacillus hongkongensis strain DSM 26322 PATRIC: 1162717.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	51.49	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	55.583	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	87.394	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	98.465	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.963	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	89.75	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudostreptobacillus hongkongensis DSM 26322 NCBI: GCA_001559795
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate anaerobe	78
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	82.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	60.7
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	58

Availability in culture collections External links

[Ref.: #21820]

Culture collection no.

DSM 26322, JCM 18691, NCTC 13659

[Ref.: #89296]

SI-ID 406157

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal to reclassify Streptobacillus hongkongensis into a novel genus as Pseudostreptobacillus hongkongensis gen. nov., comb. nov.	Eisenberg T, Glaeser SP, Blom J, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.004051	2020	*
Phylogeny	Human oropharynx as natural reservoir of Streptobacillus hongkongensis.	Lau SK, Chan JF, Tsang CC, Chan SM, Ho ML, Que TL, Lau YL, Woo PC	Sci Rep	10.1038/srep24419	2016	*
Phylogeny	Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar).	Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001050	2016	*
Phylogeny	Caviibacter abscessus gen. nov., sp. nov., a member of the family Leptotrichiaceae isolated from guinea pigs (Cavia porcellus).	Eisenberg T, Glaeser SP, Ewers C, Semmler T, Drescher B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000922	2016	*
Phylogeny	Streptobacillus hongkongensis sp. nov., isolated from patients with quinsy and septic arthritis, and emended descriptions of the genus Streptobacillus and Streptobacillus moniliformis.	Woo PCY, Wu AKL, Tsang CC, Leung KW, Ngan AHY, Curreem SOT, Lam KW, Chen JHK, Chan JFW, Lau SKP	Int J Syst Evol Microbiol	10.1099/ijs.0.061242-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21820

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26322

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68377

Automatically annotated from API NH .

#68381

Automatically annotated from API rID32STR .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89296

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406157.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Streptobacillus hongkongensis strain DSM 26322

Pseudostreptobacillus hongkongensis DSM 26322

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