Name: Aminobacterium thunnarium DSM 27500
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130807

Type strain:

Species: Aminobacterium thunnarium

Culture col. no.: DSM 27500, JCM 19320, OTA 102

Strain history: M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; OTA 102.

NCBI tax ID(s): 1482737 (species)

Section

Aminobacterium thunnarium DSM 27500 is an anaerobe, mesophilic bacterium that was isolated from sludge from anaerobic sequencing batch reactor treating wastewater from cooking tuna.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Synergistota*
	Class	*Synergistia*
	Order	*Synergistales*
	Family	*Synergistaceae*
	Genus	*Aminobacterium*
	Species	**Aminobacterium thunnarium**
	Full Scientific Name (PNU)	Aminobacterium thunnarium Hamdi et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21471]

Culture medium

AMINOBACTERIUM MEDIUM (DSMZ Medium 846a)

[Ref.: #21471]

Culture medium growth

[Ref.: #21471]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #21471]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21471]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #21471]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21471]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21471]	Sample type/isolated from	sludge from anaerobic sequencing batch reactor treating wastewater from cooking tuna
[Ref.: #21471]	Country	Tunisia
[Ref.: #21471]	Country ISO 3 Code	TUN
[Ref.: #21471]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Anaerobic sequencing batch reactor treating wastewater from cooking tuna
* marker position based on {}

Isolation sources categories

#Engineered	#Bioreactor	-
#Engineered	#Waste	#Wastewater
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ159211 (>99% sequence identity) for Aminobacterium thunnarium subclade from Microbeatlas

Aquatic Samples	1298
Soil Samples	532
Animal Samples	504
Plant Samples	93
Total Samples	2427

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21471]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21471]	Aminobacterium thunnarium strain OTA 102 16S ribosomal RNA gene, partial sequence	KJ159211	1539	ENA	1482737 tax ID

[Ref.: #21471]

GC-content

41.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21471]

Culture collection no.

DSM 27500, JCM 19320, OTA 102

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aminobacterium thunnarium sp. nov., a mesophilic, amino acid-degrading bacterium isolated from an anaerobic sludge digester, pertaining to the phylum Synergistetes.	Hamdi O, Ben Hania W, Postec A, Bouallagui H, Hamdi M, Bonin P, Ollivier B, Fardeau ML	Int J Syst Evol Microbiol	10.1099/ijs.0.068965-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21471

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27500

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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