Devosia enhydra (DSM 8908, ATCC 23634, IAM 14252)

Name: Devosia enhydra (DSM 8908, ATCC 23634, IAM 14252)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130809

Type strain

Strain Designation 9b

Variant Isotype of BacDive ID 131047

Culture col. no. DSM 8908 ATCC 23634 IAM 14252 NCIMB 12775 VKM B-1376 3 more

NCBI tax ID(s) 665118

Special Collections DSMZ JCM

History <- ATCC; ATCC 23634 <- J. T. Staley; 9b IAM 14252 <-- NCIMB 12775 <-- ATCC 23634 <-- J. T. Staley 9b.

Links

Devosia enhydra 9b is a mesophilic prokaryote that was isolated from freshwater.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 38139

ATCC 23634,NCIMB 12775,VKM B-1376,IAM 14252,DSM 8908,NBRC 102409,JCM 21106,DSM 16180

@ref 20215

Last LPSN update 2025-12-16 10:01:05

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Devosiaceae

Genus Devosia

Species Devosia enhydra

Full scientific name Devosia enhydra (Staley 1968) Park et al. 2016

Synonyms (2)

Vasilyevaea enhydra
Prosthecomicrobium enhydrum

BacDive ID	Other strains from **Devosia enhydra** (1)	Type strain
131047	D. enhydra 9b, DSM 16180, ATCC 96, ATCC 23634

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21737	MMB MEDIUM (DSMZ Medium 628)		Medium recipe at MediaDive	Name: MMB MEDIUM (DSMZ Medium 628) Composition: Glucose 1.0 g/l MgSO4 x 7 H2O 0.594 g/l (NH4)2SO4 0.25 g/l Nitrilotriacetic acid 0.2 g/l Yeast extract 0.15 g/l Peptone 0.15 g/l CaCl2 x 2 H2O 0.0667 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l Calcium pantothenate 5e-05 g/l Pyridoxine hydrochloride 5e-05 g/l Riboflavin 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Vitamin B12 1e-06 g/l Distilled water
21737	1/10 R2A MEDIUM (DSMZ Medium 1578)		Medium recipe at MediaDive	Name: 1/10 R2A MEDIUM (DSMZ Medium 1578) Composition: Agar 15.0 g/l Casamino acids 0.05 g/l Starch 0.05 g/l Glucose 0.05 g/l Proteose peptone 0.05 g/l Yeast extract 0.05 g/l K2HPO4 0.03 g/l Na-pyruvate 0.03 g/l MgSO4 x 7 H2O 0.005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21737	positive	growth	30	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: Q-10, Q-8

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ketogluconate metabolism	100	8 of 8
66794	formaldehyde oxidation	100	3 of 3
66794	allantoin degradation	100	9 of 9
66794	Entner Doudoroff pathway	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	4-hydroxymandelate degradation	100	9 of 9
66794	quinate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	resorcinol degradation	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	cellulose degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	pyrimidine metabolism	91.11	41 of 45
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	propanol degradation	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B12 metabolism	85.29	29 of 34
66794	phenylalanine metabolism	84.62	11 of 13
66794	purine metabolism	81.91	77 of 94
66794	starch degradation	80	8 of 10
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	degradation of sugar acids	80	20 of 25
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	heme metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	NAD metabolism	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	biotin biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	cysteine metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	non-pathway related	68.42	26 of 38
66794	oxidative phosphorylation	68.13	62 of 91
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	tryptophan metabolism	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	phenol degradation	65	13 of 20
66794	lipid metabolism	64.52	20 of 31
66794	lysine metabolism	64.29	27 of 42
66794	proline metabolism	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	leucine metabolism	61.54	8 of 13
66794	creatinine degradation	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	3-chlorocatechol degradation	60	3 of 5
66794	tyrosine metabolism	57.14	8 of 14
66794	degradation of pentoses	57.14	16 of 28
66794	nitrate assimilation	55.56	5 of 9
66794	degradation of hexoses	55.56	10 of 18
66794	arginine metabolism	54.17	13 of 24
66794	vitamin B1 metabolism	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	ribulose monophosphate pathway	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	selenocysteine biosynthesis	50	3 of 6
66794	pantothenate biosynthesis	50	3 of 6
66794	sphingosine metabolism	50	3 of 6
66794	CMP-KDO biosynthesis	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	vitamin B6 metabolism	45.45	5 of 11
66794	carotenoid biosynthesis	45.45	10 of 22
66794	arachidonic acid metabolism	44.44	8 of 18
66794	ascorbate metabolism	40.91	9 of 22
66794	coenzyme M biosynthesis	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	carnitine metabolism	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	d-xylose degradation	36.36	4 of 11
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	IAA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	vitamin D3 metabolism	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	chlorophyll metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	toluene degradation	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21737	freshwater	Putah Creek, Davis, California	USA	USA	North America
67770	Freshwater collected from the Putah Creek overflow	Davis, CA	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AB681765 (>99% sequence identity) for Devosia enhydra from Microbeatlas

Aquatic Samples	81
Soil Samples	55
Animal Samples	36
Plant Samples	12
Total Samples	184

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21737	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2596583700 annotated assembly for Devosia enhydra ATCC 23634	scaffold	GCA_900119845	2596583700	665118	76.94

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21737	Prosthecomicrobium enhydrum strain 9b 16S ribosomal RNA gene, partial sequence	GQ221761	1423		665118
67770	Prosthecomicrobium enhydrum gene for 16S rRNA, partial sequence, strain: NBRC 102409	AB681765	1407		665118

GC content

@ref	GC-content (mol%)	Method
21737	65.8	Buoyant density centrifugation (BD)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Devosia enhydra ATCC 23634
NCBI: GCA_900119845.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.50	no
125438	anaerobic	anaerobicⓘ	no	90.74	no
125438	aerobic	aerobicⓘ	yes	77.96	no
125438	spore-forming	spore-formingⓘ	no	89.69	no
125438	thermophilic	thermophileⓘ	no	94.66	yes
125438	flagellated	motile2+ⓘ	yes	65.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of the polyphyletic genus Prosthecomicrobium to form two novel genera, Vasilyevaea gen. nov. and Bauldia gen. nov. with four new combinations: Vasilyevaea enhydra comb. nov., Vasilyevaea mishustinii comb. nov., Bauldia consociata comb. nov. and Bauldia litoralis comb. nov.	Yee B, Oertli GE, Fuerst JA, Staley JT	Int J Syst Evol Microbiol	10.1099/ijs.0.018234-0	2010
Phylogeny	Devosia confluentis sp. nov., isolated from the junction between the ocean and a freshwater lake, and reclassification of two Vasilyevaea species as Devosia enhydra comb. nov. and Devosia mishustinii comb. nov.	Park S, Jung YT, Kim S, Yoon JH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001291	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21737	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8908
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Devosia enhydra (DSM 8908, ATCC 23634, IAM 14252)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900119845

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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