Name: Streptomyces klenkii S2704
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130725

Type strain:

Species: Streptomyces klenkii

Strain Designation: S2704

Culture col. no.: DSM 42104, KCTC 29202

Strain history: <- Nevzat Sahin,Ondokuz Mayis Univ.,Turkey

NCBI tax ID(s): 1420899 (species)

SI-ID 398754

DSM 42104

Section

Streptomyces klenkii S2704 is an aerobe, spore-forming, mesophilic bacterium that was isolated from deep marine sediment.

spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces klenkii**
	Full Scientific Name (LPSN)	Streptomyces klenkii Veyisoglu and Sahin 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.538

Multimedia content

[Ref.: #21958]

Caption:

Medium 65 28°C

[Ref.: #21958]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21958]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #21958]

Culture medium growth

[Ref.: #21958]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21958]

Culture medium composition

expand / minimize

[Ref.: #21958]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #21958]

Culture medium growth

[Ref.: #21958]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21958]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21958]			growth	28 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #21958]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21958]	Sample type/isolated from	deep marine sediment
[Ref.: #21958]	Geographic location (country and/or sea, region)	Ordu Province, Black Sea (41°00.353'N and 37°57.489'E, at a depth of 45 m)
[Ref.: #21958]	Country	Turkey
[Ref.: #21958]	Country ISO 3 Code	TUR
[Ref.: #21958]	Continent	Asia
[Ref.: #21958]	Geographic location	41.0059°/37.9581°

[Ref.: #67771]	Sample type/isolated from	From Marine Sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	Black sea
[Ref.: #67771]	Country	Turkey
[Ref.: #67771]	Country ISO 3 Code	TUR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF656772 (>99% sequence identity) for Streptomyces klenkii subclade from Microbeatlas

Aquatic Samples	29
Soil Samples	290
Animal Samples	23
Plant Samples	26
Total Samples	368

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21958]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21958]	Streptomyces klenkii strain S2704 16S ribosomal RNA gene, partial sequence	KF656772	1478	ENA	1420899 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces klenkii KCTC 29202	GCA_003626645	contig	GenBank	1420899 tax ID	*
[Ref.: #66792]	Streptomyces klenkii strain KCTC 29202	1420899.3	wgs	PATRIC	1420899 tax ID	*
[Ref.: #66792]	Streptomyces klenkii KCTC 29202	2867332405	draft	JGI IMG/M	1420899 tax ID	*

[Ref.: #21958]

GC-content

72.2 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces klenkii strain KCTC 29202 PATRIC: 1420899.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces klenkii strain KCTC 29202 PATRIC: 1420899.3
[Ref.: #69480]	motile	no	92.775	no
[Ref.: #69480]	gram-positive	yes	89.64	no
[Ref.: #69480]	anaerobic	no	99.239	yes
[Ref.: #69480]	halophile	no	92.884	no
[Ref.: #69480]	spore-forming	yes	93.629	no
[Ref.: #69480]	thermophile	no	98.235	yes
[Ref.: #69480]	glucose-util	yes	90.556	no
[Ref.: #69480]	aerobic	yes	92.427	yes
[Ref.: #69480]	flagellated	no	97.521	no
[Ref.: #69480]	glucose-ferment	no	90.504	no

Availability in culture collections External links

[Ref.: #21958]

Culture collection no.

DSM 42104, KCTC 29202

[Ref.: #89231]

SI-ID 398754

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces klenkii sp. nov., isolated from deep marine sediment.	Veyisoglu A, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-014-0325-y	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21958

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42104

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89231

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398754.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces klenkii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces klenkii strain KCTC 29202

Streptomyces klenkii strain KCTC 29202

Change proposal

Change proposal