Strain identifier
BacDive ID: 130725
Type strain: 
Species: Streptomyces klenkii
Strain Designation: S2704
Strain history: <- Nevzat Sahin,Ondokuz Mayis Univ.,Turkey
NCBI tax ID(s): 1420899 (species)
version 8.1 (current version)
General
@ref: 21958
BacDive-ID: 130725
DSM-Number: 42104
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic
description: Streptomyces klenkii S2704 is an aerobe, spore-forming, mesophilic bacterium that was isolated from deep marine sediment.
NCBI tax id
- NCBI tax id: 1420899
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21958 | <- N. Sahin, Ondokuz Mayis University,Turkey; S2704 <- A. Veyisoglu |
| 67771 | <- Nevzat Sahin,Ondokuz Mayis Univ.,Turkey |
doi: 10.13145/bacdive130725.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces klenkii
- full scientific name: Streptomyces klenkii Veyisoglu and Sahin 2015
@ref: 21958
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces klenkii
full scientific name: Streptomyces klenkii Veyisoglu and Sahin 2015
strain designation: S2704
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91.538 | |
| 69480 | 100 | positive |
multimedia
- @ref: 21958
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42104.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21958 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 21958 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21958 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 21958 | deep marine sediment | Ordu Province, Black Sea (41°00.353'N and 37°57.489'E, at a depth of 45 m) | Turkey | TUR | Asia | 41.0059 | 37.9581 |
| 67771 | From Marine Sediment | Black sea | Turkey | TUR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_148591.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_56545;97_73083;98_98293;99_148591&stattab=map
- Last taxonomy: Streptomyces klenkii subclade
- 16S sequence: KF656772
- Sequence Identity:
- Total samples: 368
- soil counts: 290
- aquatic counts: 29
- animal counts: 23
- plant counts: 26
Safety information
risk assessment
- @ref: 21958
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21958
- description: Streptomyces klenkii strain S2704 16S ribosomal RNA gene, partial sequence
- accession: KF656772
- length: 1478
- database: ena
- NCBI tax ID: 1420899
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces klenkii KCTC 29202 | GCA_003626645 | contig | ncbi | 1420899 |
| 66792 | Streptomyces klenkii strain KCTC 29202 | 1420899.3 | wgs | patric | 1420899 |
| 66792 | Streptomyces klenkii KCTC 29202 | 2867332405 | draft | img | 1420899 |
GC content
- @ref: 21958
- GC-content: 72.2
- method: fluorimetric
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 92.775 | no |
| gram-positive | yes | 89.64 | no |
| anaerobic | no | 99.239 | yes |
| halophile | no | 92.884 | no |
| spore-forming | yes | 93.629 | no |
| thermophile | no | 98.235 | yes |
| glucose-util | yes | 90.556 | no |
| aerobic | yes | 92.427 | yes |
| flagellated | no | 97.521 | no |
| glucose-ferment | no | 90.504 | no |
External links
@ref: 21958
culture collection no.: DSM 42104, KCTC 29202
straininfo link
- @ref: 89231
- straininfo: 398754
literature
- topic: Phylogeny
- Pubmed-ID: 25373841
- title: Streptomyces klenkii sp. nov., isolated from deep marine sediment.
- authors: Veyisoglu A, Sahin N
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-014-0325-y
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Geologic Sediments/*microbiology, Glycolipids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/physiology, Turkey, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21958 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42104 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42104) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89231 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398754.1 |