Name: Sphingomonas daechungensis CH15-11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130680

Type strain:

Species: Sphingomonas daechungensis

Strain Designation: CH15-11

Culture col. no.: DSM 29999, JCM 17887, KCTC 23718

Strain history: H. Huy CH15-11.

NCBI tax ID(s): 1176646 (species)

SI-ID 398149

DSM 29999

Special Collections

Section

Sphingomonas daechungensis CH15-11 is a bacterium that was isolated from water reservoir, sediment at a depth of 5 cm.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas daechungensis**
	Full Scientific Name (LPSN)	Sphingomonas daechungensis Huy et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21791]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #21791]

Culture medium growth

[Ref.: #21791]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21791]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21791]			growth	28 °C
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21791]	Sample type/isolated from	water reservoir, sediment at a depth of 5 cm
[Ref.: #21791]	Geographic location (country and/or sea, region)	Daechung Reservoir
[Ref.: #21791]	Country	Republic of Korea
[Ref.: #21791]	Country ISO 3 Code	KOR
[Ref.: #21791]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment from Daechung Reservoir
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21791]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21791]	Sphingomonas daechungensis strain CH15-11 16S ribosomal RNA gene, partial sequence	JQ772481	1436	GenBank ENA	1176646 tax ID

Availability in culture collections External links

[Ref.: #21791]

Culture collection no.

DSM 29999, JCM 17887, KCTC 23718

[Ref.: #89187]

SI-ID 398149

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas sabuli sp. nov., a carotenoid-producing bacterium isolated from beach sand.	Kang M, Chhetri G, Kim J, Kim I, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004896	2021	*
Phylogeny	Sphingomonas rhizophila sp. nov., isolated from rhizosphere of Hibiscus syriacus.	Yan ZF, Lin P, Won KH, Li CT, Park G, Chin B, Kook M, Wang QJ, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002566	2018	*
Phylogeny	Sphingomonas limnosediminicola sp. nov. and Sphingomonas palustris sp. nov., isolated from freshwater environments.	Lee JH, Kim DI, Choe HN, Lee SD, Seong CN	Int J Syst Evol Microbiol	10.1099/ijsem.0.002029	2017	*
Phylogeny	Sphingomonas lutea sp. nov., isolated from freshwater of an artificial reservoir.	Lee JH, Kim DI, Kang JW, Seong CN	Int J Syst Evol Microbiol	10.1099/ijsem.0.001546	2016	*
Phylogeny	Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil.	Ahn JH, Kim BC, Kim SJ, Lee GH, Song J, Kwon SW, Weon HY	J Microbiol	10.1007/s12275-015-5132-2	2015	*
Phylogeny	Sphingomonas daechungensis sp. nov., isolated from sediment of a eutrophic reservoir.	Huy H, Jin L, Lee KC, Kim SG, Lee JS, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.054510-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21791

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29999

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#89187

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398149.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sphingomonas daechungensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF