Strain identifier

BacDive ID: 130680

Type strain: Yes

Species: Sphingomonas daechungensis

Strain Designation: CH15-11

Strain history: H. Huy CH15-11.

NCBI tax ID(s): 1176646 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21791

BacDive-ID: 130680

DSM-Number: 29999

keywords: 16S sequence, Bacteria, mesophilic

description: Sphingomonas daechungensis CH15-11 is a mesophilic bacterium that was isolated from water reservoir, sediment at a depth of 5 cm.

NCBI tax id

  • NCBI tax id: 1176646
  • Matching level: species

strain history

@refhistory
21791<- KCTC <- H. Huy et al., Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea
67770H. Huy CH15-11.

doi: 10.13145/bacdive130680.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas daechungensis
  • full scientific name: Sphingomonas daechungensis Huy et al. 2014

@ref: 21791

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas daechungensis

full scientific name: Sphingomonas daechungensis Huy et al. 2014

strain designation: CH15-11

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21791
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21791positivegrowth28mesophilic
67770positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21791water reservoir, sediment at a depth of 5 cmDaechung ReservoirRepublic of KoreaKORAsia
67770Sediment from Daechung ReservoirRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Water reservoir (Aquarium/pool)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 21791
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21791
  • description: Sphingomonas daechungensis strain CH15-11 16S ribosomal RNA gene, partial sequence
  • accession: JQ772481
  • length: 1436
  • database: ena
  • NCBI tax ID: 1176646

External links

@ref: 21791

culture collection no.: DSM 29999, JCM 17887, KCTC 23718

straininfo link

  • @ref: 89187
  • straininfo: 398149

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24449789Sphingomonas daechungensis sp. nov., isolated from sediment of a eutrophic reservoir.Huy H, Jin L, Lee KC, Kim SG, Lee JS, Ahn CY, Oh HMInt J Syst Evol Microbiol10.1099/ijs.0.054510-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Eutrophication, Fatty Acids/chemistry, Geologic Sediments/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry, *Water MicrobiologyGenetics
Phylogeny26428917Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil.Ahn JH, Kim BC, Kim SJ, Lee GH, Song J, Kwon SW, Weon HYJ Microbiol10.1007/s12275-015-5132-22015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis/genetics, Fatty Acids/analysis, Molecular Sequence Data, Panax/*microbiology, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Republic of Korea, *Soil Microbiology, Sphingomonas/chemistry/*classification/genetics/*isolation & purification, Ubiquinone/analogs & derivatives/analysisGenetics
Phylogeny27902188Sphingomonas lutea sp. nov., isolated from freshwater of an artificial reservoir.Lee JH, Kim DI, Kang JW, Seong CNInt J Syst Evol Microbiol10.1099/ijsem.0.0015462016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistryTranscriptome
Phylogeny28820093Sphingomonas limnosediminicola sp. nov. and Sphingomonas palustris sp. nov., isolated from freshwater environments.Lee JH, Kim DI, Choe HN, Lee SD, Seong CNInt J Syst Evol Microbiol10.1099/ijsem.0.0020292017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistryTranscriptome
Phylogeny29388549Sphingomonas rhizophila sp. nov., isolated from rhizosphere of Hibiscus syriacus.Yan ZF, Lin P, Won KH, Li CT, Park G, Chin B, Kook M, Wang QJ, Yi THInt J Syst Evol Microbiol10.1099/ijsem.0.0025662018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Hibiscus/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistryTranscriptome
Phylogeny34323678Sphingomonas sabuli sp. nov., a carotenoid-producing bacterium isolated from beach sand.Kang M, Chhetri G, Kim J, Kim I, Seo TInt J Syst Evol Microbiol10.1099/ijsem.0.0048962021Bacterial Typing Techniques, Base Composition, Carotenoids, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sand, Sequence Analysis, DNA, Soil Microbiology, Spermidine, *Sphingomonas/geneticsTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21791Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29999Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29999)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
89187Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398149.1