Strain identifier
BacDive ID: 130680
Type strain:
Species: Sphingomonas daechungensis
Strain Designation: CH15-11
Strain history: H. Huy CH15-11.
NCBI tax ID(s): 1176646 (species)
General
@ref: 21791
BacDive-ID: 130680
DSM-Number: 29999
keywords: 16S sequence, Bacteria, mesophilic
description: Sphingomonas daechungensis CH15-11 is a mesophilic bacterium that was isolated from water reservoir, sediment at a depth of 5 cm.
NCBI tax id
- NCBI tax id: 1176646
- Matching level: species
strain history
@ref | history |
---|---|
21791 | <- KCTC <- H. Huy et al., Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea |
67770 | H. Huy CH15-11. |
doi: 10.13145/bacdive130680.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas daechungensis
- full scientific name: Sphingomonas daechungensis Huy et al. 2014
@ref: 21791
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Pseudomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas daechungensis
full scientific name: Sphingomonas daechungensis Huy et al. 2014
strain designation: CH15-11
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21791
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21791 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21791 | water reservoir, sediment at a depth of 5 cm | Daechung Reservoir | Republic of Korea | KOR | Asia |
67770 | Sediment from Daechung Reservoir | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Built environment | #Water reservoir (Aquarium/pool) |
#Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 21791
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21791
- description: Sphingomonas daechungensis strain CH15-11 16S ribosomal RNA gene, partial sequence
- accession: JQ772481
- length: 1436
- database: ena
- NCBI tax ID: 1176646
External links
@ref: 21791
culture collection no.: DSM 29999, JCM 17887, KCTC 23718
straininfo link
- @ref: 89187
- straininfo: 398149
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24449789 | Sphingomonas daechungensis sp. nov., isolated from sediment of a eutrophic reservoir. | Huy H, Jin L, Lee KC, Kim SG, Lee JS, Ahn CY, Oh HM | Int J Syst Evol Microbiol | 10.1099/ijs.0.054510-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Eutrophication, Fatty Acids/chemistry, Geologic Sediments/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry, *Water Microbiology | Genetics |
Phylogeny | 26428917 | Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil. | Ahn JH, Kim BC, Kim SJ, Lee GH, Song J, Kwon SW, Weon HY | J Microbiol | 10.1007/s12275-015-5132-2 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis/genetics, Fatty Acids/analysis, Molecular Sequence Data, Panax/*microbiology, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Republic of Korea, *Soil Microbiology, Sphingomonas/chemistry/*classification/genetics/*isolation & purification, Ubiquinone/analogs & derivatives/analysis | Genetics |
Phylogeny | 27902188 | Sphingomonas lutea sp. nov., isolated from freshwater of an artificial reservoir. | Lee JH, Kim DI, Kang JW, Seong CN | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001546 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry | Transcriptome |
Phylogeny | 28820093 | Sphingomonas limnosediminicola sp. nov. and Sphingomonas palustris sp. nov., isolated from freshwater environments. | Lee JH, Kim DI, Choe HN, Lee SD, Seong CN | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002029 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry | Transcriptome |
Phylogeny | 29388549 | Sphingomonas rhizophila sp. nov., isolated from rhizosphere of Hibiscus syriacus. | Yan ZF, Lin P, Won KH, Li CT, Park G, Chin B, Kook M, Wang QJ, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002566 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Hibiscus/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry | Transcriptome |
Phylogeny | 34323678 | Sphingomonas sabuli sp. nov., a carotenoid-producing bacterium isolated from beach sand. | Kang M, Chhetri G, Kim J, Kim I, Seo T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004896 | 2021 | Bacterial Typing Techniques, Base Composition, Carotenoids, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sand, Sequence Analysis, DNA, Soil Microbiology, Spermidine, *Sphingomonas/genetics | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21791 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29999 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29999) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
89187 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398149.1 |