Sphingomonas naasensis (DSM 100060, KACC 16534, NBRC 108943)

Name: Sphingomonas naasensis (DSM 100060, KACC 16534, NBRC 108943)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130679

Type strain

Strain Designation KIS18-15

Culture col. no. DSM 100060 KACC 16534 NBRC 108943 KIS18-15

NCBI tax ID(s) 1344951

Special Collections DSMZ

Links

Sphingomonas naasensis KIS18-15 is a mesophilic prokaryote that was isolated from forest soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407706

NBRC 108943,DSM 100060

@ref 20215

Last LPSN update 2025-12-16 10:01:03

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas naasensis

Full scientific name Sphingomonas naasensis Kim et al. 2014

Synonyms (1)

Alteristakelama naasensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	94.578
125439	negative	97.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21790	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21790	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.4

Spore formation

@ref	Spore formation	Confidence
125438		91.6
125439		96.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21790	forest soil	Baengnyeong Island	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21790	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1176214v1 assembly for Sphingomonas naasensis DSM 100060	scaffold	GCA_011762145	1344951.4	2828413566	1344951	77.64
66792	ASM479269v1 assembly for Sphingomonas naasensis KIS18-15	scaffold	GCA_004792695	1344951.3	8048181484	1344951	75.08

Genome browser: GCA_011762145

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21790	Sphingomonas naasensis strain KIS18-15 from South Korea 16S ribosomal RNA gene, partial sequence	KC735149	1426		1344951

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphingomonas naasensis DSM 100060
NCBI: GCA_011762145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.40	no
125439	motility	BacteriaNetⓘ	yes	62.60	no
125439	gram_stain	BacteriaNetⓘ	negative	97.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingomonas naasensis DSM 100060
NCBI: GCA_011762145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.58	no
125438	anaerobic	anaerobicⓘ	no	94.46	no
125438	aerobic	aerobicⓘ	yes	89.16	no
125438	spore-forming	spore-formingⓘ	no	91.60	no
125438	thermophilic	thermophileⓘ	no	96.89	yes
125438	flagellated	motile2+ⓘ	yes	67.65	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of vB_StuS_MMDA13, a Newly Discovered Bacteriophage Infecting the Agar-Degrading Species Sphingomonas turrisvirgatae.	Marmo P, Thaller MC, Di Lallo G, Henrici De Angelis L, Poerio N, De Santis F, Fraziano M, Migliore L, D'Andrea MM.	Viruses	10.3390/v12080894	2020
Phylogeny	Sphingomonas gei sp. nov., isolated from roots of Geum aleppicum.	Zhu L, Si M, Li C, Xin K, Chen C, Shi X, Huang R, Zhao L, Shen X, Zhang L	Int J Syst Evol Microbiol	10.1099/ijs.0.000074	2015
Phylogeny	Sphingomonas aerophila sp. nov. and Sphingomonas naasensis sp. nov., isolated from air and soil, respectively.	Kim SJ, Moon JY, Lim JM, Ahn JH, Weon HY, Ahn TY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.055269-0	2013
Phylogeny	Sphingomonas psychrotolerans sp. nov., isolated from root surface of Leontopodium leontopodioides in the Tianshan Mountains, Xinjiang, China.	Luo Y, Zhou M, Wang F, Sheng H	Int J Syst Evol Microbiol	10.1099/ijsem.0.005396	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21790	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100060
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingomonas naasensis (DSM 100060, KACC 16534, NBRC 108943)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_011762145

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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