Name: Novosphingobium fluoreni HLJ-RS18
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130668

Type strain:

Species: Novosphingobium fluoreni

Strain Designation: HLJ-RS18

Culture col. no.: DSM 27568, ACCC 19180

Strain history: <- S. Gao, China Agric. Univ., Beijing; HLJ-RS18

NCBI tax ID(s): 1391222 (species)

SI-ID 401291

DSM 27568

Section

Novosphingobium fluoreni HLJ-RS18 is a mesophilic, Gram-negative bacterium that was isolated from rice seeds' surface.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Novosphingobium*
	Species	**Novosphingobium fluoreni**
	Full Scientific Name (LPSN)	Novosphingobium fluoreni Gao et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.976

Multimedia content

[Ref.: #21704]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21704]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #21704]

Culture medium growth

[Ref.: #21704]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21704]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21704]			growth	28 °C

[Ref.: #21704]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21704]	Sample type/isolated from	rice seeds' surface
[Ref.: #21704]	Geographic location (country and/or sea, region)	Heilongjiang Province, Jiansanjiang
[Ref.: #21704]	Country	China
[Ref.: #21704]	Country ISO 3 Code	CHN
[Ref.: #21704]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF460450 (>99% sequence identity) for Novosphingobium fluoreni from Microbeatlas

Aquatic Samples	162
Soil Samples	151
Animal Samples	651
Plant Samples	134
Total Samples	1098

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21704]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21704]	Novosphingobium fluoreni strain HLJ-RS18 16S ribosomal RNA gene, partial sequence	KF460450	1450	ENA	1391222 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Novosphingobium fluoreni DSM 27568	GCA_014196615	scaffold	GenBank	1391222 tax ID	*
[Ref.: #66792]	Novosphingobium fluoreni strain DSM 27568	1391222.3	wgs	PATRIC	1391222 tax ID	*
[Ref.: #66792]	Novosphingobium fluoreni DSM 27568	2829922874	draft	JGI IMG/M	1391222 tax ID	*

[Ref.: #21704]

GC-content

62 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Novosphingobium fluoreni DSM 27568 NCBI: GCA_014196615.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Novosphingobium fluoreni DSM 27568 NCBI: GCA_014196615.1
[Ref.: #69480]	flagellated	no	92.328	no
[Ref.: #69480]	gram-positive	no	97.429	no
[Ref.: #69480]	anaerobic	no	97.61	no
[Ref.: #69480]	aerobic	yes	88.969	no
[Ref.: #69480]	halophile	no	97.375	no
[Ref.: #69480]	spore-forming	no	93.938	no
[Ref.: #69480]	glucose-util	yes	83.041	no
[Ref.: #69480]	thermophile	no	99.09	yes
[Ref.: #69480]	motile	yes	52.914	no
[Ref.: #69480]	glucose-ferment	no	92.896	no

Availability in culture collections External links

[Ref.: #21704]

Culture collection no.

DSM 27568, ACCC 19180

[Ref.: #89176]

SI-ID 401291

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novosphingobium fluoreni sp. nov., isolated from rice seeds.	Gao S, Zhang Y, Jiang N, Luo L, Li QX, Li J	Int J Syst Evol Microbiol	10.1099/ijs.0.000111	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21704

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27568

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89176

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401291.1 )

* These data were automatically processed and therefore are not curated

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Novosphingobium fluoreni DSM 27568

Novosphingobium fluoreni DSM 27568

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