Name: Novosphingobium rhizosphaerae JM-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130667

Type strain:

Species: Novosphingobium rhizosphaerae

Strain Designation: JM-1

Culture col. no.: DSM 29344, CCM 8547, LMG 28479, CIP 110827

Strain history: CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM-1

NCBI tax ID(s): 1551649 (species)

SI-ID 399901

DSM 29344

Section

Novosphingobium rhizosphaerae JM-1 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from rizosphere of Zea mays.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Novosphingobium*
	Species	**Novosphingobium rhizosphaerae**
	Full Scientific Name (LPSN)	Novosphingobium rhizosphaerae Kämpfer et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #122209]	Gram stain	negative

[Ref.: #122209]	Cell shape	rod-shaped

[Ref.: #122209]	Motility	no

Multimedia content

[Ref.: #21703]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21703]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #21703]

Culture medium growth

[Ref.: #21703]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21703]

Culture medium composition

expand / minimize

[Ref.: #122209]

Culture medium

CIP Medium 72

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #21703]			growth	28 °C

[Ref.: #21703]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21703]	23292	-	-	-	-	-	+	-	+	+	+	+	-	+	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21703]	Sample type/isolated from	rizosphere of Zea mays
[Ref.: #21703]	Host species	Zea mays
[Ref.: #21703]	Geographic location (country and/or sea, region)	Alabama, Tallassee (Macon county)
[Ref.: #21703]	Country	USA
[Ref.: #21703]	Country ISO 3 Code	USA
[Ref.: #21703]	Continent	North America

[Ref.: #122209]	Sample type/isolated from	Environment, Soil, rhizosphere
[Ref.: #122209]	Geographic location (country and/or sea, region)	Alabama
[Ref.: #122209]	Country	United States of America
[Ref.: #122209]	Country ISO 3 Code	USA
[Ref.: #122209]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21703]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122209]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21703]	Novosphingobium rhizosphaerae strain JM-1 16S ribosomal RNA gene, partial sequence	KM365125	1394	ENA	1551649 tax ID

Availability in culture collections External links

[Ref.: #21703]

Culture collection no.

DSM 29344, CCM 8547, LMG 28479, CIP 110827

[Ref.: #89175]

SI-ID 399901

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Novosphingobiumflavum sp. nov., isolated from soil.	Nguyen TM, Myung SW, Jang H, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001242	2016	*
Phylogeny	Proposal of Novosphingobium rhizosphaerae sp. nov., isolated from the rhizosphere.	Kampfer P, Martin K, McInroy JA, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.070375-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21703

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29344

#68369

Automatically annotated from API 20NE .

#89175

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399901.1 )

#122209 Collection of Institut Pasteur ; Curators of the CIP; CIP 110827
* These data were automatically processed and therefore are not curated

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