Name: Sphingobium fuliginis KK22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130669

Type strain:

Species: Sphingobium fuliginis

Strain Designation: KK22

Culture col. no.: DSM 29313, JCM 30309

Strain history: R. A. Kanaly; Yokohama City Univ., Japan; KK22.

NCBI tax ID(s): 336203 (species)

SI-ID 400022

DSM 29313

Other strains from Sphingobium fuliginis

S. fuliginis TKP, DSM 18781, CCM 7327, MTCC ... (type strain)
S. fuliginis DSM 16637, ATCC 27551, CIP 104270

Section

Sphingobium fuliginis KK22 is a mesophilic bacterium that was isolated from cattle pasture soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	**Sphingobium fuliginis**
	Full Scientific Name (LPSN)	Sphingobium fuliginis Prakash and Lal 2006

Synonym

Sphingobium barthaii

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #21781]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21781]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #21781]

Culture medium growth

[Ref.: #21781]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21781]

Culture medium composition

expand / minimize

[Ref.: #21781]

Culture medium

MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462)

[Ref.: #21781]

Culture medium growth

[Ref.: #21781]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21781]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21781]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #21781]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21781]	Sample type/isolated from	cattle pasture soil
[Ref.: #21781]	Geographic location (country and/or sea, region)	Texas,Gulf region
[Ref.: #21781]	Country	USA
[Ref.: #21781]	Country ISO 3 Code	USA
[Ref.: #21781]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Diesel-fuel-degrading bacterial consortium originally recovered from cattle pasture soil in the Gulf region of TX
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Grassland
#Host	#Mammals	#Bovinae (Cow, Cattle)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ830159 (>99% sequence identity) for Sphingobium from Microbeatlas

Aquatic Samples	361
Soil Samples	347
Animal Samples	121
Plant Samples	88
Total Samples	917

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21781]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21781]	Sphingobium barthaii strain KK22 16S ribosomal RNA gene, partial sequence	HQ830159	1481	ENA	1054037 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingobium fuliginis KK22	GCA_000474175	contig	GenBank	336203 tax ID
[Ref.: #66792]	Sphingobium fuliginis KK22	GCA_015074805	complete	GenBank	336203 tax ID	*

[Ref.: #21781]	GC-content	64.7 mol%	sequence analysis
[Ref.: #67770]	GC-content	64.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobium fuliginis KK22 NCBI: GCA_015074805.1
[Ref.: #69480]	flagellated	no	88.381	no
[Ref.: #69480]	gram-positive	no	97.715	no
[Ref.: #69480]	anaerobic	no	99.235	no
[Ref.: #69480]	aerobic	yes	92.977	no
[Ref.: #69480]	halophile	no	97.849	no
[Ref.: #69480]	spore-forming	no	93.791	no
[Ref.: #69480]	thermophile	no	95.491	yes
[Ref.: #69480]	glucose-util	yes	86.714	no
[Ref.: #69480]	motile	yes	64.828	no
[Ref.: #69480]	glucose-ferment	no	93.714	no

Availability in culture collections External links

[Ref.: #21781]

Culture collection no.

DSM 29313, JCM 30309

[Ref.: #89177]

SI-ID 400022

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobium barthaii sp. nov., a high molecular weight polycyclic aromatic hydrocarbon-degrading bacterium isolated from cattle pasture soil.	Maeda AH, Kunihiro M, Ozeki Y, Nogi Y, Kanaly RA	Int J Syst Evol Microbiol	10.1099/ijs.0.000356	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21781

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29313

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89177

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400022.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sphingobium fuliginis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF