Name: Saccharothrix carnea NEAU-yn17
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130591

Type strain:

Species: Saccharothrix carnea

Strain Designation: NEAU-yn17

Culture col. no.: DSM 45878, CGMCC 4.7097, JCM 32496

Strain history: CGMCC 4.7097 <-- C. Liu; Northeast Agric. Univ., China; NEAU-yn17.

NCBI tax ID(s): 1280637 (species)

SI-ID 404911

DSM 45878

Special Collections

DSMZ
JCM

Section

Saccharothrix carnea NEAU-yn17 is a spore-forming, Gram-positive bacterium that was isolated from soil from a wastewater discharge site of a pesticide factory.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharothrix*
	Species	**Saccharothrix carnea**
	Full Scientific Name (LPSN)	Saccharothrix carnea Liu et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %90

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21774]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #21774]

Culture medium growth

[Ref.: #21774]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21774]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21774]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21774]	Sample type/isolated from	soil from a wastewater discharge site of a pesticide factory
[Ref.: #21774]	Geographic location (country and/or sea, region)	Heilongjiang Province, Harbin (45° 45' N 126° 41' E)
[Ref.: #21774]	Country	China
[Ref.: #21774]	Country ISO 3 Code	CHN
[Ref.: #21774]	Continent	Asia
[Ref.: #21774]	Geographic location	45.7500°/126.6830°

[Ref.: #67770]	Sample type/isolated from	Soil at the wastewater discharge site of a pesticide factory in Harbin
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Wastewater
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21774]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21774]	Saccharothrix carnea strain NEAU-yn17 16S ribosomal RNA gene, partial sequence	KC195859	1511	GenBank ENA	1280637 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Saccharothrix carnea CGMCC 4.7097	GCA_003014735	contig	GenBank ENA	1280637 tax ID
[Ref.: #66792]	Saccharothrix carnea strain CGMCC 4.7097	1280637.3	wgs	PATRIC	1280637 tax ID	*
[Ref.: #66792]	Saccharothrix carnea CGMCC 4.7097	2718217663	draft	JGI IMG/M	1280637 tax ID	*

[Ref.: #21774]

GC-content

74.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharothrix carnea strain CGMCC 4.7097 PATRIC: 1280637.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharothrix carnea strain CGMCC 4.7097 PATRIC: 1280637.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.231	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.36	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.697	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.717	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.9	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #21774]

Culture collection no.

DSM 45878, CGMCC 4.7097, JCM 32496

[Ref.: #89106]

SI-ID 404911

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharothrix carnea sp. nov., an actinobacterium isolated from soil.	Liu C, Guan X, Wang S, Zhao J, Wang H, He H, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijs.0.065557-0	2014	*
Phylogeny	Saccharothrix luteola sp. nov., a novel cellulose-degrading actinobacterium isolated from soil and emended description of the genus Saccharothrix.	He C, Sun X, Huang Z, Wang Z, Luo X, Song J, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005572	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21774

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45878

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89106

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404911.1 )

* These data were automatically processed and therefore are not curated

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Saccharothrix carnea strain CGMCC 4.7097

Saccharothrix carnea strain CGMCC 4.7097

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