Name: Saccharothrix tamanrassetensis SA198
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130592

Type strain:

Species: Saccharothrix tamanrassetensis

Strain Designation: SA198

Culture col. no.: DSM 45947, CECT 8640

Strain history: <- N. Sabaou, Ecole Normale Supérieure de Kouba, Alger, Algeria; Sa198 <- A. Zitouni et al.

NCBI tax ID(s): 1051531 (species)

SI-ID 403232

DSM 45947

Section

Saccharothrix tamanrassetensis SA198 is a spore-forming, mesophilic bacterium that was isolated from Saharan soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharothrix*
	Species	**Saccharothrix tamanrassetensis**
	Full Scientific Name (LPSN)	Saccharothrix tamanrassetensis Boubetra et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.501

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21775]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #21775]

Culture medium growth

[Ref.: #21775]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21775]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21775]			growth	28 °C

[Ref.: #21775]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21775]	Sample type/isolated from	Saharan soil
[Ref.: #21775]	Geographic location (country and/or sea, region)	Hoggar region, Tamanrasset (22° 47' 0'' N 5° 31' 0'' E)
[Ref.: #21775]	Country	Algeria
[Ref.: #21775]	Country ISO 3 Code	DZA
[Ref.: #21775]	Continent	Africa
[Ref.: #21775]	Geographic location	22.7833°/5.5167°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Desert
#Climate	#Hot	#Arid

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21775]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21775]	Saccharothrix tamanrassetensis strain SA198 16S ribosomal RNA gene, partial sequence	KJ504176	1438	ENA	1051531 tax ID
[Ref.: #21775]	Saccharothrix tamanrassetensis strain SA198 16S ribosomal RNA gene, partial sequence	JN036396	1426	ENA	1051531 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharothrix tamanrassetensis CECT 8640	GCA_014203665	scaffold	GenBank	1051531 tax ID	*
[Ref.: #66792]	Saccharothrix tamanrassetensis strain CECT 8640	1051531.3	wgs	PATRIC	1051531 tax ID	*
[Ref.: #66792]	Saccharothrix tamanrassetensis CECT 8640	2863320540	draft	JGI IMG/M	1051531 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharothrix tamanrassetensis CECT 8640 NCBI: GCA_014203665.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharothrix tamanrassetensis CECT 8640 NCBI: GCA_014203665.1
[Ref.: #69480]	flagellated	no	96.694	no
[Ref.: #69480]	gram-positive	yes	89.619	no
[Ref.: #69480]	anaerobic	no	98.916	no
[Ref.: #69480]	aerobic	yes	89.94	no
[Ref.: #69480]	halophile	no	92.519	no
[Ref.: #69480]	spore-forming	yes	95.122	no
[Ref.: #69480]	glucose-util	yes	89.118	no
[Ref.: #69480]	thermophile	no	98.304	yes
[Ref.: #69480]	motile	no	91.432	no
[Ref.: #69480]	glucose-ferment	no	93.16	no

Availability in culture collections External links

[Ref.: #21775]

Culture collection no.

DSM 45947, CECT 8640

[Ref.: #89107]

SI-ID 403232

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharothrix tamanrassetensis sp. nov., an actinomycete isolated from Saharan soil.	Boubetra D, Zitouni A, Bouras N, Schumann P, Sproer C, Klenk HP, Sabaou N	Int J Syst Evol Microbiol	10.1099/ijs.0.000104	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21775

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45947

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89107

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403232.1 )

* These data were automatically processed and therefore are not curated

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Saccharothrix tamanrassetensis CECT 8640

Saccharothrix tamanrassetensis CECT 8640

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