Name: Mesorhizobium sangaii SCAU7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130533

Type strain:

Species: Mesorhizobium sangaii

Strain Designation: SCAU7

Culture col. no.: DSM 100039, ACCC 13218, HAMBI 3318

Strain history: <- HAMBI <- K. Lindström, Univ. Helsinki <- X. Zhang, Sichuan Agricultural Univ., Fac. of Resource and Environmental Scs., China; SCAU7

NCBI tax ID(s): 505389 (species)

SI-ID 397932

DSM 100039

Section

Mesorhizobium sangaii SCAU7 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from effective root nodules of Astragalus luteolus.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium sangaii**
	Full Scientific Name (LPSN)	Mesorhizobium sangaii Zhou et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30802]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #30802]	Cell length	2 µm

[Ref.: #30802]	Cell width	0.45 µm

[Ref.: #30802]	Cell shape	rod-shaped

[Ref.: #30802]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.817

[Ref.: #22041]

Incubation period

2-3 days

[Ref.: #30802]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22041]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #22041]

Culture medium growth

[Ref.: #22041]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22041]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22041]			growth	30 °C
[Ref.: #30802]			optimum	27.5 °C

[Ref.: #22041]	Temperature range	mesophilic
[Ref.: #30802]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30802]			optimum	7
[Ref.: #30802]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30802]

Oxygen tolerance

aerobe

[Ref.: #30802]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30802]		NaCl		optimum	1	%

[Ref.: #30802]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30802]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30802]	cellobiose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30802]	fructose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30802]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30802]	L-arabitol ChEBI	+	carbon source
[Ref.: #30802]	lactose ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30802]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30802]	mannose ChEBI	+	carbon source
[Ref.: #30802]	melibiose ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #30802]	raffinose ChEBI	+	carbon source
[Ref.: #30802]	rhamnose ChEBI	+	carbon source
[Ref.: #30802]	ribose ChEBI	+	carbon source
[Ref.: #30802]	sorbitol ChEBI	+	carbon source
[Ref.: #30802]	sucrose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30802]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #22041]	catalase	+	1.11.1.6
[Ref.: #30802]	catalase	+	1.11.1.6
[Ref.: #30802]	cytochrome oxidase	+	1.9.3.1
[Ref.: #22041]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22041]	24151	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22041]	Sample type/isolated from	effective root nodules of Astragalus luteolus
[Ref.: #22041]	Host species	Astragalus luteolus
[Ref.: #22041]	Geographic location (country and/or sea, region)	Ganzi, Sichuan
[Ref.: #22041]	Country	China
[Ref.: #22041]	Country ISO 3 Code	CHN
[Ref.: #22041]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU514525 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	5652
Soil Samples	18576
Animal Samples	4689
Plant Samples	1771
Total Samples	30688

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22041]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22041]	Mesorhizobium sangaii strain SCAU7 16S ribosomal RNA gene, partial sequence	EU514525	1356	ENA	505389 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mesorhizobium sangaii DSM 100039	GCA_014207355	scaffold	GenBank	505389 tax ID	*
[Ref.: #66792]	Mesorhizobium sangaii strain DSM 100039	505389.5	wgs	PATRIC	505389 tax ID	*
[Ref.: #66792]	Mesorhizobium sangaii DSM 100039	2861136876	draft	JGI IMG/M	505389 tax ID	*

[Ref.: #30802]	GC-content	58.27 mol%
[Ref.: #22041]	GC-content	58.27 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mesorhizobium sangaii DSM 100039 NCBI: GCA_014207355.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mesorhizobium sangaii DSM 100039 NCBI: GCA_014207355.1
[Ref.: #69480]	flagellated	no	87.436	no
[Ref.: #69480]	gram-positive	no	97.837	yes
[Ref.: #69480]	anaerobic	no	99.018	yes
[Ref.: #69480]	aerobic	yes	91.139	no
[Ref.: #69480]	halophile	no	93.804	yes
[Ref.: #69480]	spore-forming	no	94.265	yes
[Ref.: #69480]	glucose-util	yes	90.248	no
[Ref.: #69480]	thermophile	no	99.503	yes
[Ref.: #69480]	glucose-ferment	no	90.796	yes
[Ref.: #69480]	motile	yes	89.368	no

Availability in culture collections External links

[Ref.: #22041]

Culture collection no.

DSM 100039, ACCC 13218, HAMBI 3318

[Ref.: #89056]

SI-ID 397932

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesorhizobium calcicola sp. nov., Mesorhizobium waitakense sp. nov., Mesorhizobium sophorae sp. nov., Mesorhizobium newzealandense sp. nov. and Mesorhizobium kowhaii sp. nov. isolated from Sophora root nodules.	De Meyer SE, Tan HW, Andrews M, Heenan PB, Willems A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000796	2015	*
Phylogeny	Mesorhizobium sangaii sp. nov., isolated from the root nodules of Astragalus luteolus and Astragalus ernestii.	Zhou S, Li Q, Jiang H, Lindstrom K, Zhang X	Int J Syst Evol Microbiol	10.1099/ijs.0.044685-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22041

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100039

#30802

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27133 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89056

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397932.1 )

#27133

IJSEM 2794 2013 ( DOI 10.1099/ijs.0.044685-0 , PubMed 23315406 )

* These data were automatically processed and therefore are not curated

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Mesorhizobium sangaii DSM 100039

Mesorhizobium sangaii DSM 100039

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