Name: Mesorhizobium qingshengii DSM 29667
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130532

Type strain:

Species: Mesorhizobium qingshengii

Culture col. no.: DSM 29667, CCBAU 33460, CGMCC 1.12097, HAMBI 3277, LMG 26793

Strain history: <- LMG <- Xinhua Sui China Agricultural University <- W. Zheng; CCBAU 33460

NCBI tax ID(s): 1165689 (species)

SI-ID 389446

LMG 26793, CGMCC 1.12097, HAMBI 3277, DSM 29667

Section

Mesorhizobium qingshengii DSM 29667 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from effective nodule Astragalus sinicus L..

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium qingshengii**
	Full Scientific Name (LPSN)	Mesorhizobium qingshengii Zheng et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30787]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #30787]	Cell length	1.435 µm

[Ref.: #30787]	Cell width	0.45 µm

[Ref.: #30787]	Cell shape	rod-shaped

[Ref.: #22040]

Incubation period

3-7 days

[Ref.: #30787]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22040]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #22040]

Culture medium growth

[Ref.: #22040]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22040]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22040]	growth	30 °C
[Ref.: #30787]	growth	10-35 °C
[Ref.: #30787]	optimum	28 °C

[Ref.: #22040]	Temperature range	mesophilic
[Ref.: #30787]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30787]			optimum	7
[Ref.: #30787]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30787]

Oxygen tolerance

aerobe

[Ref.: #30787]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30787]		NaCl		optimum	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30787]	arabinose ChEBI	+	carbon source
[Ref.: #30787]	arginine ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30787]	fructose ChEBI	+	carbon source
[Ref.: #30787]	galactose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30787]	glucose ChEBI	+	carbon source
[Ref.: #30787]	glutamate ChEBI	+	carbon source
[Ref.: #30787]	glycine ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30787]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30787]	mannose ChEBI	+	carbon source
[Ref.: #30787]	melibiose ChEBI	+	carbon source
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #30787]	proline ChEBI	+	carbon source
[Ref.: #30787]	ribose ChEBI	+	carbon source
[Ref.: #30787]	succinate ChEBI	+	carbon source
[Ref.: #30787]	sucrose ChEBI	+	carbon source
[Ref.: #30787]	threonine ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #30787]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #22040]	catalase	+	1.11.1.6
[Ref.: #30787]	catalase	+	1.11.1.6
[Ref.: #22040]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #30787]	urease	+	3.5.1.5

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22040]	24071	-	-	-	-	+/-	-	-	-	-	+	-	-	+/-	+	+/-	-	+/-	+/-	+/-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22040]	Sample type/isolated from	effective nodule Astragalus sinicus L.
[Ref.: #22040]	Host species	Astragalus sinicus
[Ref.: #22040]	Geographic location (country and/or sea, region)	Jiangxi province, Yuan Zhou district, Yi Chun City
[Ref.: #22040]	Country	China
[Ref.: #22040]	Country ISO 3 Code	CHN
[Ref.: #22040]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ339788 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	5652
Soil Samples	18576
Animal Samples	4689
Plant Samples	1771
Total Samples	30688

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22040]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22040]	Mesorhizobium qingshengii strain CCBAU 33460 16S ribosomal RNA gene, partial sequence	JQ339788	1308	ENA	1165689 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mesorhizobium qingshengii CGMCC 1.12097	GCA_900103325	scaffold	GenBank	1165689 tax ID	*
[Ref.: #66792]	Mesorhizobium qingshengii strain CGMCC 1.12097	1165689.4	wgs	PATRIC	1165689 tax ID	*
[Ref.: #66792]	Mesorhizobium qingshengii CGMCC 1.12097	2596583656	draft	JGI IMG/M	1165689 tax ID	*

[Ref.: #30787]

GC-content

59.52 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mesorhizobium qingshengii CGMCC 1.12097 NCBI: GCA_900103325.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mesorhizobium qingshengii CGMCC 1.12097 NCBI: GCA_900103325.1
[Ref.: #69480]	motile	yes	82.189	no
[Ref.: #69480]	flagellated	no	88.314	no
[Ref.: #69480]	gram-positive	no	97.887	yes
[Ref.: #69480]	anaerobic	no	98.63	no
[Ref.: #69480]	aerobic	yes	89.189	yes
[Ref.: #69480]	halophile	no	94.28	yes
[Ref.: #69480]	spore-forming	no	94.911	yes
[Ref.: #69480]	glucose-ferment	no	90.93	yes
[Ref.: #69480]	thermophile	no	99.39	no
[Ref.: #69480]	glucose-util	yes	89.718	no

Availability in culture collections External links

[Ref.: #22040]

Culture collection no.

DSM 29667, CCBAU 33460, CGMCC 1.12097, HAMBI 3277, LMG 26793

[Ref.: #89055]

SI-ID 389446

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesorhizobium terrae sp. nov., a novel species isolated from soil in Jangsu, Korea.	Jung YJ, Kim HJ, Hur M	Antonie Van Leeuwenhoek	10.1007/s10482-020-01435-0	2020	*
Phylogeny	Mesorhizobium waimense sp. nov. isolated from Sophora longicarinata root nodules and Mesorhizobium cantuariense sp. nov. isolated from Sophora microphylla root nodules.	De Meyer SE, Wee Tan H, Heenan PB, Andrews M, Willems A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000430	2015	*
Phylogeny	Mesorhizobium qingshengii sp. nov., isolated from effective nodules of Astragalus sinicus.	Zheng WT, Li Y, Wang R, Sui XH, Zhang XX, Zhang JJ, Wang ET, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.044362-0	2012	*
Phylogeny	Aquibium microcysteis gen. nov., sp. nov., isolated from a Microcystis aeruginosa culture and reclassification of Mesorhizobium carbonis as Aquibium carbonis comb. nov. and Mesorhizobium oceanicum as Aquibium oceanicum comb. nov.	Kim M, Kim W, Park W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005230	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22040

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29667

#30787

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27118 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89055

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389446.1 )

#27118

IJSEM 2002 2013 ( DOI 10.1099/ijs.0.044362-0 , PubMed 23041644 )

* These data were automatically processed and therefore are not curated

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Mesorhizobium qingshengii CGMCC 1.12097

Mesorhizobium qingshengii CGMCC 1.12097

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