Chryseobacterium oleae CT348 | Type strain | DSM 25575, CCUG 63020 | BacDiveID:130330

Strain identifier

BacDive ID: 130330

Type strain:

Species: Chryseobacterium oleae

Strain Designation: CT348

Culture col. no.: DSM 25575, CCUG 63020

Strain history: <- M. Montero-Calasanz, IFAPA Centro Las Torres-Tomejil, Consejeria de Agricultura y Pesca, Alcalá del Rio (Sevilla), Spain; CT348

NCBI tax ID(s): 491207 (species)

SI-ID 407231

DSM 25575, CCUG 63020

Special Collections

DSMZ
CCUG

Section

Chryseobacterium oleae CT348 is an aerobe, Gram-negative bacterium that was isolated from rhizosphere of organic olive grove .

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium oleae**
	Full Scientific Name (LPSN)	Chryseobacterium oleae Montero-Calasanz et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.955

Incubation period

1 day

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21875]			growth	28 °C
[Ref.: #62933]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21875]	Sample type/isolated from	rhizosphere of organic olive grove (Olea europaea L. cv. arbequina)
[Ref.: #21875]	Host species	Olea europaea
[Ref.: #21875]	Geographic location (country and/or sea, region)	Seville, Mairena del Aljarafe (37°20'18.97'' N, 6°5'8.61'' W)
[Ref.: #21875]	Country	Spain
[Ref.: #21875]	Country ISO 3 Code	ESP
[Ref.: #21875]	Continent	Europe
[Ref.: #21875]	Geographic location	37.3386°/-6.0857°

[Ref.: #62933]	Sample type/isolated from	Rhizosphere of organic olive grove
[Ref.: #62933]	Sampling date	2006-04-01
[Ref.: #62933]	Geographic location (country and/or sea, region)	Mairena del Aljarafe (Seville)
[Ref.: #62933]	Country	Spain
[Ref.: #62933]	Country ISO 3 Code	ESP
[Ref.: #62933]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Grove (Orchard)
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Global distribution of 16S sequence EU336939 (>99% sequence identity) for Chryseobacterium oleae subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	47
Animal Samples	75
Plant Samples	9
Total Samples	143

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21875]	Chryseobacterium oleae strain CT348 16S ribosomal RNA gene, partial sequence	EU336939	1480	GenBank ENA	491207 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium oleae DSM 25575	GCA_900115055	contig	GenBank ENA	491207 tax ID	*
[Ref.: #66792]	Chryseobacterium oleae strain DSM 25575	491207.4	wgs	PATRIC	491207 tax ID	*
[Ref.: #66792]	Chryseobacterium oleae DSM 25575	2684622910	draft	JGI IMG/M	491207 tax ID	*

GC-content

38.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium oleae strain DSM 25575 PATRIC: 491207.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium oleae strain DSM 25575 PATRIC: 491207.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.955	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.187	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.305	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.598	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

Culture collection no.

DSM 25575, CCUG 63020

SI-ID 407231

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense.	Montero-Calasanz Mdel C, Goker M, Rohde M, Sproer C, Schumann P, Busse HJ, Schmid M, Klenk HP, Tindall BJ, Camacho M	Syst Appl Microbiol	10.1016/j.syapm.2014.04.004	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21875

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25575

#62933 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63020

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88863

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407231.1 )

* These data were automatically processed and therefore are not curated

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