Name: Chryseobacterium takakiae AG1-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130331

Type strain:

Species: Chryseobacterium takakiae

Strain Designation: AG1-2

Culture col. no.: DSM 26898, CGMCC 1.12488

Strain history: <- Y. Li, College of Life Sci., Capital Normal Univ., Beijing , PR China; AG1-2 <- X. Chen and R. Zhao

NCBI tax ID(s): 1302685 (species)

SI-ID 398502

DSM 26898

Special Collections

DSMZ

Section

Chryseobacterium takakiae AG1-2 is a bacterium that was isolated from bryophyte Takakia lepidozioides.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium takakiae**
	Full Scientific Name (LPSN)	Chryseobacterium takakiae Zhao et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21876]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #21876]

Culture medium growth

[Ref.: #21876]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21876]

Culture medium composition

expand / minimize

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21876]	Sample type/isolated from	bryophyte Takakia lepidozioides
[Ref.: #21876]	Host species	Takakia lepidozioides
[Ref.: #21876]	Geographic location (country and/or sea, region)	Tibet province, Gawalong glacier
[Ref.: #21876]	Country	China
[Ref.: #21876]	Country ISO 3 Code	CHN
[Ref.: #21876]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Moss

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC560016 (>99% sequence identity) for Chryseobacterium from Microbeatlas

Aquatic Samples	63
Soil Samples	32
Animal Samples	276
Plant Samples	49
Total Samples	420

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21876]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21876]	Chryseobacterium takakiae strain AG1-2 16S ribosomal RNA gene, partial sequence	KC560016	1478	GenBank ENA	1302685 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium takakiae DSM 26898	GCA_900129385	scaffold	GenBank ENA	1302685 tax ID	*
[Ref.: #66792]	Chryseobacterium takakiae strain DSM 26898	1302685.4	wgs	PATRIC	1302685 tax ID	*
[Ref.: #66792]	Chryseobacterium takakiae DSM 26898	2695420944	draft	JGI IMG/M	1302685 tax ID	*

[Ref.: #21876]

GC-content

37.3 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium takakiae DSM 26898 NCBI: GCA_900129385.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium takakiae DSM 26898 NCBI: GCA_900129385.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.058	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.357	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.82	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.077	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	no

Availability in culture collections External links

[Ref.: #21876]

Culture collection no.

DSM 26898, CGMCC 1.12488

[Ref.: #88864]

SI-ID 398502

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium takakiae sp. nov., a member of the phylum Bacteroidetes isolated from Takakia lepidozioides.	Zhao R, Chen XY, Li XD, Chen ZL, Li YH	Int J Syst Evol Microbiol	10.1099/ijs.0.065888-0	2014	*
Phylogeny	Chryseobacterium nepalense sp. nov., isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001680	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21876

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26898

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88864

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398502.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Chryseobacterium takakiae in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Chryseobacterium takakiae DSM 26898

Chryseobacterium takakiae DSM 26898

Change proposal

Change proposal