Chryseobacterium takakiae (DSM 26898, CGMCC 1.12488, AG1-2)

Name: Chryseobacterium takakiae (DSM 26898, CGMCC 1.12488, AG1-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130331

Type strain

Strain Designation AG1-2

Culture col. no. DSM 26898 CGMCC 1.12488 AG1-2

NCBI tax ID(s) 1302685

Special Collections DSMZ

History <- Y. Li, College of Life Sci., Capital Normal Univ., Beijing , PR China; AG1-2 <- X. Chen and R. Zhao

Links

Chryseobacterium takakiae AG1-2 is a bacterium that was isolated from bryophyte Takakia lepidozioides.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398502

DSM 26898

@ref 20215

Last LPSN update 2026-02-09 11:31:11

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium takakiae

Full scientific name Chryseobacterium takakiae Zhao et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97
125439	negative	99.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21876	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21876	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.1

Spore formation

@ref	Spore formation	Confidence
125439		98.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Moss

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
21876	bryophyte Takakia lepidozioides	Takakia lepidozioides	Tibet province, Gawalong glacier	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KC560016 (>99% sequence identity) for Chryseobacterium from Microbeatlas

Aquatic Samples	63
Soil Samples	32
Animal Samples	276
Plant Samples	49
Total Samples	420

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21876	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2695420944 annotated assembly for Chryseobacterium takakiae DSM 26898	scaffold	GCA_900129385	1302685.4	2695420944	1302685	70.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21876	Chryseobacterium takakiae strain AG1-2 16S ribosomal RNA gene, partial sequence	KC560016	1478		1302685

GC content

@ref	GC-content (mol%)	Method
21876	37.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chryseobacterium takakiae DSM 26898
NCBI: GCA_900129385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.80	no
125439	motility	BacteriaNetⓘ	no	81.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chryseobacterium takakiae DSM 26898
NCBI: GCA_900129385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	no
125438	anaerobic	anaerobicⓘ	no	97.06	no
125438	aerobic	aerobicⓘ	yes	88.36	no
125438	spore-forming	spore-formingⓘ	no	88.82	no
125438	thermophilic	thermophileⓘ	no	98.08	no
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Insights into Evolutionary, Genomic, and Biogeographic Characterizations of Chryseobacterium nepalense Represented by a Polyvinyl Alcohol-Degrading Bacterium, AC3.	Liu X, Wang D, Yin Z, Sun L, Pang S, Liu J, Li W, Cui S, Huang W, Du Y, Xie Z.	Microbiol Spectr	10.1128/spectrum.02179-22	2022
Phylogeny	Chryseobacterium takakiae sp. nov., a member of the phylum Bacteroidetes isolated from Takakia lepidozioides.	Zhao R, Chen XY, Li XD, Chen ZL, Li YH	Int J Syst Evol Microbiol	10.1099/ijs.0.065888-0	2014
Phylogeny	Chryseobacterium nepalense sp. nov., isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001680	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21876	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26898
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium takakiae (DSM 26898, CGMCC 1.12488, AG1-2)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900129385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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