Winogradskyella jejuensis (DSM 25330, JCM 18454, KCTC 23835)

Name: Winogradskyella jejuensis (DSM 25330, JCM 18454, KCTC 23835)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130329

Type strain

Strain Designation CP32

Culture col. no. DSM 25330 JCM 18454 KCTC 23835 CP32

NCBI tax ID(s) 1089305

Special Collections DSMZ JCM KCTC

History <- J. Y. Kim, Jeju National Univ., Rep. of Korea; CP32 J.-Y. Kim CP32.

Links

Winogradskyella jejuensis CP32 is a bacterium that was isolated from brown alga Carpopeltis affinis.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407066

KCTC 23835,JCM 18454,DSM 25330

@ref 20215

Last LPSN update 2026-02-09 11:31:11

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Winogradskyella

Species Winogradskyella jejuensis

Full scientific name Winogradskyella jejuensis Kim and Oh 2015

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	96.5
125438	98.481	negative
125439	99.9	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21866	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21866	positive	growth	25
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.9

Spore formation

@ref	Spore formation	Confidence
125438		93.218
125439		99

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Brown Algae

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
21866	brown alga Carpopeltis affinis	Carpopeltis affinis	coast of Jeju Island	Republic of Korea	KOR	Asia
67770	Brown alga Carpopeltis affinis collected along coast of Jeju Island	Carpopeltis affinis		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence JF820844 (>99% sequence identity) for Winogradskyella jejuensis from Microbeatlas

Aquatic Samples	408
Soil Samples	11
Animal Samples	8
Plant Samples	15
Total Samples	442

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21866	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2695420983 annotated assembly for Winogradskyella jejuensis DSM 25330	contig	GCA_900129745	1089305.3	2695420983	1089305	76.97

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21866	Winogradskyella jejuensis strain CP32 16S ribosomal RNA gene, partial sequence	JF820844	1441		1089305

GC content

@ref	GC-content (mol%)	Method
21866	33.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Winogradskyella jejuensis DSM 25330
NCBI: GCA_900129745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	motility	BacteriaNetⓘ	no	67.00	no
125439	spore_formation	BacteriaNetⓘ	no	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Winogradskyella jejuensis strain DSM 25330
PATRIC: 1089305.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.48	no
125438	anaerobic	anaerobicⓘ	no	96.32	no
125438	spore-forming	spore-formingⓘ	no	93.22	no
125438	aerobic	aerobicⓘ	yes	85.67	no
125438	thermophilic	thermophileⓘ	no	97.39	no
125438	flagellated	motile2+ⓘ	no	96.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Winogradskyella jejuensis sp. nov., a marine bacterium isolated from a brown alga Carpopeltis affinis.	Kim JY, Oh DC	J Microbiol	10.1007/s12275-012-2447-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21866	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25330
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Winogradskyella jejuensis (DSM 25330, JCM 18454, KCTC 23835)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900129745

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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