Shouchella oshimensis (DSM 19099, JCM 13820, MLB 2)

Name: Shouchella oshimensis (DSM 19099, JCM 13820, MLB 2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1273

Type strain

Culture col. no. DSM 19099 JCM 13820 MLB 2 MTCC 7633 LMG 24751 1 more

NCBI tax ID(s) 300825

Special Collections DSMZ JCM CIP Literature strains

History <- JCM <- R.K. Jain R. K. Jain MLB2. CIP <- 2007, JCM <- 2006, R.K. Jain, MTCC, Chandigarh, India: strain MLB2

Links

Shouchella oshimensis DSM 19099 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297134

JCM 13820,DSM 19099,CIP 109550,LMG 24751

@ref 20215

Last LPSN update 2026-02-09 11:18:04

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Shouchella

Species Shouchella oshimensis

Full scientific name Shouchella oshimensis (Yumoto et al. 2005) Joshi et al. 2022

Synonyms (9)

Alkalihalobacillus plakortidis
Bacillus oshimensis
Alkalicoccobacillus plakortidis
Bacillus lehensis
Bacillus plakortidis
Alkalihalobacillus lehensis
Alkalihalobacillus oshimensis
Shouchella lehensis
Shouchella plakortidis

BacDive ID	Other strains from **Shouchella oshimensis** (2)	Type strain
1259	S. oshimensis K11, DSM 18940, CIP 108751, JCM 12663, NCIMB ... (type strain)
1274	S. oshimensis P203, DSM 19153, NCIMB 14288

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31900	positive	2.4 µm	0.65 µm	rod-shaped
120575	positive			rod-shaped

Pigmentation

31900

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Composition	Medium link
37648	Marine agar (MA)	Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120575	CIP Medium 13		Medium recipe at CIP
120575	CIP Medium 328		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
31900	positive	growth	10-37
31900	positive	optimum	25
37648	positive	growth	25
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
31900	positive	optimum	8
31900	positive	growth	07-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31900	aerobe
125439	obligate aerobe	94.3

Spore formation

@ref	Spore formation	Confidence
31900
125438		92.675

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31900	NaCl	positive	growth	0-12 %
31900	NaCl	positive	optimum	6 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31900	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
31900	28644 ChEBI	2-oxopentanoate	+	carbon source
31900	30089 ChEBI	acetate	+	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
31900	23652 ChEBI	dextrin	+	carbon source
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
31900	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31900	5291 ChEBI	gelatin	+	carbon source
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31900	17754 ChEBI	glycerol	+	carbon source
31900	28087 ChEBI	glycogen	+	carbon source
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
31900	18403 ChEBI	L-arabitol	+	carbon source
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31900	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
31900	17306 ChEBI	maltose	+	carbon source
31900	29864 ChEBI	mannitol	+	carbon source
31900	37684 ChEBI	mannose	+	carbon source
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31900	17632 ChEBI	nitrate	+	reduction
120575	17632 ChEBI	nitrate	-	reduction
120575	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
31900	17272 ChEBI	propionate	+	carbon source
31900	15361 ChEBI	pyruvate	+	carbon source
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
31900	30911 ChEBI	sorbitol	+	carbon source
31900	17992 ChEBI	sucrose	+	carbon source
31900	27082 ChEBI	trehalose	+	carbon source
31900	53423 ChEBI	tween 40	+	carbon source
31900	53425 ChEBI	tween 60	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
31900	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120575	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31900	catalase	+	1.11.1.6
120575	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31900	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
31900	gelatinase	+
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
120575	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
120575	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120575	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120575	not determinedn.d.	+/-	-	-	+/-	+/-	+/-	-	-	-	-	+/-	+/-	+/-	-	-	-	-	+/-	-	-	-	+/-	-	-	+/-	-	+/-	+/-	-	-	+/-	+/-	-	+/-	+/-	+/-	+/-	-	-	+/-	-	-	-	-	+/-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7890	soil	Leh	India	IND	Asia
67770	Soil collected from Leh		India	IND	Asia
120575	Environment, Soil	Leh	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY793550 (>99% sequence identity) for Alkalihalobacillus from Microbeatlas

Aquatic Samples	620
Soil Samples	2128
Animal Samples	2142
Plant Samples	604
Total Samples	5494

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7890	1	Risk group (German classification) According to TRBA 466
120575	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM437509v1 assembly for Shouchella lehensis DSM 19099	scaffold	GCA_004375095	300825.3	8066995485	300825	75.83

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7890	Bacillus lehensis strain MLB2 16S ribosomal RNA gene, partial sequence	AY793550	1525		300825

GC content

@ref	GC-content (mol%)	Method
7890	41.4
67770	41.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shouchella lehensis DSM 19099
NCBI: GCA_004375095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.20	no
125439	motility	BacteriaNetⓘ	yes	85.40	no
125439	gram_stain	BacteriaNetⓘ	variable	68.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus lehensis strain DSM 19099
PATRIC: 300825.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.15	yes
125438	anaerobic	anaerobicⓘ	no	99.17	yes
125438	spore-forming	spore-formingⓘ	yes	92.68	no
125438	aerobic	aerobicⓘ	yes	81.85	no
125438	thermophilic	thermophileⓘ	no	93.15	no
125438	flagellated	motile2+ⓘ	yes	86.93	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based reclassification of Bacillus plakortidis Borchert et al. 2007 and Bacillus lehensis Ghosh et al. 2007 as a later heterotypic synonym of Bacillus oshimensis Yumoto et al. 2005; Bacillus rhizosphaerae Madhaiyan et al. 2011 as a later heterotypic synonym of Bacillus clausii Nielsen et al. 1995.	Liu GH, Narsing Rao MP, Dong ZY, Wang JP, Che JM, Chen QQ, Sengonca C, Liu B, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-019-01299-z	2019
	Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera.	Joshi A, Thite S, Karodi P, Joseph N, Lodha T.	Front Microbiol	10.3389/fmicb.2021.722369	2021
Phylogeny	Bacillus miscanthi sp. nov., a alkaliphilic bacterium from the rhizosphere of Miscanthus sacchariflorus.	Shin B, Park C, Lee BH, Lee KE, Park W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003982	2020
Phylogeny	Bacillus lehensis sp. nov., an alkalitolerant bacterium isolated from soil.	Ghosh A, Bhardwaj M, Satyanarayana T, Khurana M, Mayilraj S, Jain RK	Int J Syst Evol Microbiol	10.1099/ijs.0.64617-0	2007

References

#7890	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19099
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28158	IJSEM 238 2007 ( DOI 10.1099/ijs.0.64617-0 , PubMed 17267957 )
#31900	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28158
#37648	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120575	Collection of Institut Pasteur ; Curators of the CIP; CIP 109550
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shouchella oshimensis (DSM 19099, JCM 13820, MLB 2)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004375095

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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