Name: Pseudoalteromonas lipolytica DSM 22356
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12702

Type strain:

Species: Pseudoalteromonas lipolytica

Culture col. no.: DSM 22356, CGMCC 1.8499, JCM 15903, LMEB 39

Strain history: X.-W. Xu LMEB 39.

NCBI tax ID(s): 1315275 (strain), 570156 (species)

SI-ID 401772

DSM 22356

Special Collections

Section

Pseudoalteromonas lipolytica DSM 22356 is an aerobe, Gram-negative, motile bacterium that was isolated from sea water.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas lipolytica**
	Full Scientific Name (LPSN)	Pseudoalteromonas lipolytica Xu et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29639]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #29639]	Cell length	01-02 µm

[Ref.: #29639]	Cell width	0.5-0.8 µm

[Ref.: #29639]	Cell shape	rod-shaped

[Ref.: #29639]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %91.4

[Ref.: #29639]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16180]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16180]

Culture medium growth

[Ref.: #16180]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16180]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16180]	growth	28 °C
[Ref.: #29639]	growth	15-37 °C
[Ref.: #29639]	optimum	25 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29639]			optimum	07-08
[Ref.: #29639]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29639]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29639]		NaCl		growth	0.5-15	%
[Ref.: #29639]		NaCl		optimum	3	%

[Ref.: #29639]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29639]	adipate ChEBI	+	carbon source
[Ref.: #29639]	arabinose ChEBI	+	carbon source
[Ref.: #29639]	decanoate ChEBI	+	carbon source
[Ref.: #29639]	esculin ChEBI	+	hydrolysis
[Ref.: #29639]	malate ChEBI	+	carbon source
[Ref.: #29639]	maltose ChEBI	+	carbon source
[Ref.: #29639]	nitrate ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #29639]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29639]		catalase	+	1.11.1.6
[Ref.: #29639]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16180]	Sample type/isolated from	sea water
[Ref.: #16180]	Geographic location (country and/or sea, region)	Yangtze River estuary near East China Sea, (31° 00' 04'' N 122° 37' 26'' E)
[Ref.: #16180]	Country	China
[Ref.: #16180]	Country ISO 3 Code	CHN
[Ref.: #16180]	Continent	Asia
[Ref.: #16180]	Geographic location	31.0011°/122.6240°

[Ref.: #67770]	Sample type/isolated from	Seawater sample collected from the Yangtze River estuary near the East China Sea
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16180]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16180]	Pseudoalteromonas lipolytica strain LMEB 39 16S ribosomal RNA gene, partial sequence	FJ404721	1503	GenBank ENA	1315275 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas lipolytica CGMCC 1.8499	GCA_900116435	scaffold	GenBank ENA	570156 tax ID	*
[Ref.: #66792]	Pseudoalteromonas lipolytica LMEB 39	1315275.3	wgs	PATRIC	1315275 tax ID	*
[Ref.: #66792]	Pseudoalteromonas lipolytica strain CGMCC 1.8499	570156.7	wgs	PATRIC	570156 tax ID	*
[Ref.: #66792]	Pseudoalteromonas lipolytica CGMCC 1.8499	2617270886	draft	JGI IMG/M	570156 tax ID	*

[Ref.: #16180]	GC-content	42.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29639]	GC-content	42.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas lipolytica LMEB 39 PATRIC: 1315275.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.439	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.226	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	70.155	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.944	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	91.4	no

Availability in culture collections External links

[Ref.: #16180]

Culture collection no.

DSM 22356, CGMCC 1.8499, JCM 15903, LMEB 39

[Ref.: #81912]

SI-ID 401772

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas profundi sp. nov., isolated from a deep-sea seamount.	Zhang DC, Liu YX, Huang HJ, Wu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001366	2016	*
Phylogeny	Pseudoalteromonas shioyasakiensis sp. nov., a marine polysaccharide-producing bacterium.	Matsuyama H, Sawazaki K, Minami H, Kasahara H, Horikawa K, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijs.0.055558-0	2013	*
Phylogeny	Pseudoalteromonas arabiensis sp. nov., a marine polysaccharide-producing bacterium.	Matsuyama H, Minami H, Kasahara H, Kato Y, Murayama M, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijs.0.043604-0	2012	*
Phylogeny	Pseudoalteromonas lipolytica sp. nov., isolated from the Yangtze River estuary.	Xu XW, Wu YH, Wang CS, Gao XH, Wang XG, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.017673-0	2009	*

References

#16180

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22356

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29639

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26028 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81912

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401772.1 )

#26028

IJSEM 2176 2010 ( DOI 10.1099/ijs.0.017673-0 , PubMed 19897616 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudoalteromonas lipolytica in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Pseudoalteromonas lipolytica LMEB 39

Change proposal

Change proposal