Strain identifier

BacDive ID: 12702

Type strain: Yes

Species: Pseudoalteromonas lipolytica

Strain history: X.-W. Xu LMEB 39.

NCBI tax ID(s): 1315275 (strain), 570156 (species)

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General

@ref: 16180

BacDive-ID: 12702

DSM-Number: 22356

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Pseudoalteromonas lipolytica DSM 22356 is an aerobe, Gram-negative, motile bacterium that was isolated from sea water.

NCBI tax id

NCBI tax idMatching level
570156species
1315275strain

strain history

@refhistory
16180<- Y.-H. Wu, Zhejiang Univ., Zijingang Campus, P.R. China; LMEB39
67770X.-W. Xu LMEB 39.

doi: 10.13145/bacdive12702.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas lipolytica
  • full scientific name: Pseudoalteromonas lipolytica Xu et al. 2010

@ref: 16180

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas lipolytica

full scientific name: Pseudoalteromonas lipolytica Xu et al. 2010

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29639negative01-02 µm0.5-0.8 µmrod-shapedyes
69480yes91.4
69480negative100

pigmentation

  • @ref: 29639
  • production: no

Culture and growth conditions

culture medium

  • @ref: 16180
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
16180positivegrowth28
29639positivegrowth15-37
29639positiveoptimum25
67770positivegrowth30

culture pH

@refabilitytypepHPH range
29639positivegrowth5.5-9.5alkaliphile
29639positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

  • @ref: 29639
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
29639NaClpositivegrowth0.5-15 %
29639NaClpositiveoptimum3 %

observation

@refobservation
29639aggregates in chains
67770quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2963917128adipate+carbon source
2963922599arabinose+carbon source
2963927689decanoate+carbon source
2963925115malate+carbon source
2963917306maltose+carbon source
296394853esculin+hydrolysis
2963917632nitrate+reduction

metabolite production

  • @ref: 29639
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
29639catalase+1.11.1.6
29639cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
16180sea waterYangtze River estuary near East China Sea, (31° 00' 04'' N 122° 37' 26'' E)ChinaCHNAsia31.0011122.624
67770Seawater sample collected from the Yangtze River estuary near the East China Sea

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

  • @ref: 16180
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16180
  • description: Pseudoalteromonas lipolytica strain LMEB 39 16S ribosomal RNA gene, partial sequence
  • accession: FJ404721
  • length: 1503
  • database: nuccore
  • NCBI tax ID: 1315275

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoalteromonas lipolytica CGMCC 1.8499GCA_900116435scaffoldncbi570156
66792Pseudoalteromonas lipolytica LMEB 391315275.3wgspatric1315275
66792Pseudoalteromonas lipolytica strain CGMCC 1.8499570156.7wgspatric570156
66792Pseudoalteromonas lipolytica CGMCC 1.84992617270886draftimg570156

GC content

@refGC-contentmethod
1618042.3thermal denaturation, midpoint method (Tm)
2963942.3

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno100no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.439no
69480spore-formingspore-formingAbility to form endo- or exosporesno88.226no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes70.155no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno99.944yes
69480flagellatedmotile2+Ability to perform flagellated movementyes91.4no

External links

@ref: 16180

culture collection no.: DSM 22356, CGMCC 1.8499, JCM 15903, LMEB 39

straininfo link

  • @ref: 81912
  • straininfo: 401772

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19897616Pseudoalteromonas lipolytica sp. nov., isolated from the Yangtze River estuary.Xu XW, Wu YH, Wang CS, Gao XH, Wang XG, Wu MInt J Syst Evol Microbiol10.1099/ijs.0.017673-02009China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/*metabolism, Molecular Sequence Data, Phylogeny, Pseudoalteromonas/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny22962336Pseudoalteromonas arabiensis sp. nov., a marine polysaccharide-producing bacterium.Matsuyama H, Minami H, Kasahara H, Kato Y, Murayama M, Yumoto IInt J Syst Evol Microbiol10.1099/ijs.0.043604-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Geologic Sediments/microbiology, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polysaccharides, Bacterial/*biosynthesis, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analysisGenetics
Phylogeny24021728Pseudoalteromonas shioyasakiensis sp. nov., a marine polysaccharide-producing bacterium.Matsuyama H, Sawazaki K, Minami H, Kasahara H, Horikawa K, Yumoto IInt J Syst Evol Microbiol10.1099/ijs.0.055558-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, *Phylogeny, Polysaccharides, Bacterial/*biosynthesis, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny27493151Pseudoalteromonas profundi sp. nov., isolated from a deep-sea seamount.Zhang DC, Liu YX, Huang HJ, Wu JInt J Syst Evol Microbiol10.1099/ijsem.0.0013662016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16180Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22356)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22356
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29639Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2602828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
81912Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401772.1StrainInfo: A central database for resolving microbial strain identifiers