Strain identifier

BacDive ID: 12702

Type strain: Yes

Species: Pseudoalteromonas lipolytica

Strain history: X.-W. Xu LMEB 39.

NCBI tax ID(s): 1315275 (strain), 570156 (species)

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General

@ref: 16180

BacDive-ID: 12702

DSM-Number: 22356

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudoalteromonas lipolytica DSM 22356 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water.

NCBI tax id

NCBI tax idMatching level
570156species
1315275strain

strain history

@refhistory
16180<- Y.-H. Wu, Zhejiang Univ., Zijingang Campus, P.R. China; LMEB39
67770X.-W. Xu LMEB 39.

doi: 10.13145/bacdive12702.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas lipolytica
  • full scientific name: Pseudoalteromonas lipolytica Xu et al. 2010

@ref: 16180

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas lipolytica

full scientific name: Pseudoalteromonas lipolytica Xu et al. 2010

type strain: yes

Morphology

cell morphology

  • @ref: 29639
  • gram stain: negative
  • cell length: 01-02 µm
  • cell width: 0.5-0.8 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29639
  • production: no

Culture and growth conditions

culture medium

  • @ref: 16180
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16180positivegrowth28mesophilic
29639positivegrowth15-37
29639positiveoptimum25mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29639positivegrowth5.5-9.5alkaliphile
29639positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

  • @ref: 29639
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
29639NaClpositivegrowth0.5-15 %
29639NaClpositiveoptimum3 %

observation

@refobservation
29639aggregates in chains
67770quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2963917128adipate+carbon source
2963922599arabinose+carbon source
2963927689decanoate+carbon source
2963925115malate+carbon source
2963917306maltose+carbon source
296394853esculin+hydrolysis
2963917632nitrate+reduction

metabolite production

  • @ref: 29639
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
29639catalase+1.11.1.6
29639cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
16180sea waterYangtze River estuary near East China Sea, (31° 00' 04'' N 122° 37' 26'' E)ChinaCHNAsia31.0011122.624
67770Seawater sample collected from the Yangtze River estuary near the East China Sea

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

  • @ref: 16180
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16180
  • description: Pseudoalteromonas lipolytica strain LMEB 39 16S ribosomal RNA gene, partial sequence
  • accession: FJ404721
  • length: 1503
  • database: ena
  • NCBI tax ID: 1315275

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoalteromonas lipolytica CGMCC 1.8499GCA_900116435scaffoldncbi570156
66792Pseudoalteromonas lipolytica LMEB 391315275.3wgspatric1315275
66792Pseudoalteromonas lipolytica strain CGMCC 1.8499570156.7wgspatric570156
66792Pseudoalteromonas lipolytica CGMCC 1.84992617270886draftimg570156

GC content

@refGC-contentmethod
1618042.3thermal denaturation, midpoint method (Tm)
2963942.3

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes92.223yes
gram-positiveno99.05yes
anaerobicno95.19yes
halophileno65.855no
spore-formingno94.624no
glucose-utilyes92.158no
flagellatedyes91.89no
thermophileno99.305yes
aerobicyes86.287no
glucose-fermentno73.97no

External links

@ref: 16180

culture collection no.: DSM 22356, CGMCC 1.8499, JCM 15903, LMEB 39

straininfo link

  • @ref: 81912
  • straininfo: 401772

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19897616Pseudoalteromonas lipolytica sp. nov., isolated from the Yangtze River estuary.Xu XW, Wu YH, Wang CS, Gao XH, Wang XG, Wu MInt J Syst Evol Microbiol10.1099/ijs.0.017673-02009China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/*metabolism, Molecular Sequence Data, Phylogeny, Pseudoalteromonas/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny22962336Pseudoalteromonas arabiensis sp. nov., a marine polysaccharide-producing bacterium.Matsuyama H, Minami H, Kasahara H, Kato Y, Murayama M, Yumoto IInt J Syst Evol Microbiol10.1099/ijs.0.043604-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Geologic Sediments/microbiology, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polysaccharides, Bacterial/*biosynthesis, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analysisGenetics
Phylogeny24021728Pseudoalteromonas shioyasakiensis sp. nov., a marine polysaccharide-producing bacterium.Matsuyama H, Sawazaki K, Minami H, Kasahara H, Horikawa K, Yumoto IInt J Syst Evol Microbiol10.1099/ijs.0.055558-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, *Phylogeny, Polysaccharides, Bacterial/*biosynthesis, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny27493151Pseudoalteromonas profundi sp. nov., isolated from a deep-sea seamount.Zhang DC, Liu YX, Huang HJ, Wu JInt J Syst Evol Microbiol10.1099/ijsem.0.0013662016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16180Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22356)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22356
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29639Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2602828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
81912Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401772.1StrainInfo: A central database for resolving microbial strain identifiers