Name: Pseudoalteromonas aliena SW19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12699

Type strain:

Species: Pseudoalteromonas aliena

Strain Designation: SW19

Culture col. no.: DSM 16473, KMM 3562, CIP 108625, LMG 22059

Strain history: CIP <- 2005, E. Ivanova, Swinburne Univ., Hawthorn, Australia: strain SW19

NCBI tax ID(s): 247523 (species)

SI-ID 126439

LMG 22059, DSM 16473, CIP 108625

Section

Pseudoalteromonas aliena SW19 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from sea water.

Gram-negative
motile
rod-shaped
obligate aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas aliena**
	Full Scientific Name (LPSN)	Pseudoalteromonas aliena Ivanova et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30194]	Gram stain	negative
[Ref.: #116233]	Gram stain	negative

[Ref.: #30194]	Cell width	0.7-0.9 µm

[Ref.: #30194]	Cell shape	rod-shaped
[Ref.: #116233]	Cell shape	rod-shaped

[Ref.: #30194]	Motility	yes
[Ref.: #116233]	Motility	yes

[Ref.: #30194]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6463]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6463]

Culture medium growth

[Ref.: #6463]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6463]

Culture medium composition

expand / minimize

[Ref.: #37446]

Culture medium

Marine agar (MA)

[Ref.: #37446]

Culture medium growth

[Ref.: #37446]

Culture medium composition

expand / minimize

[Ref.: #116233]

Culture medium

CIP Medium 13

[Ref.: #116233]

Culture medium growth

[Ref.: #116233]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6463]	growth	22 °C
[Ref.: #30194]	growth	04-29 °C
[Ref.: #30194]	optimum	23.5 °C
[Ref.: #37446]	growth	25 °C

[Ref.: #6463]	Temperature range	psychrophilic
[Ref.: #30194]	Temperature range	psychrophilic
[Ref.: #37446]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30194]			optimum	7.75
[Ref.: #30194]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116233]

Oxygen tolerance

obligate aerobe

[Ref.: #30194]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30194]		NaCl		growth	0.5-6	%
[Ref.: #30194]		NaCl		optimum	3.25	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30194]	glucose ChEBI	+	carbon source
[Ref.: #30194]	maltose ChEBI	+	carbon source
[Ref.: #30194]	mannitol ChEBI	+	carbon source
[Ref.: #116233]	nitrate ChEBI	-	reduction
[Ref.: #116233]	nitrite ChEBI	-	reduction
[Ref.: #30194]	sucrose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #116233]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #30194]	catalase	+	1.11.1.6
[Ref.: #116233]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #30194]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #30194]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116233]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116233]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116233]	11338	-	+	-	+	-	+	+	-	-	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6463]	Sample type/isolated from	sea water
[Ref.: #6463]	Geographic location (country and/or sea, region)	Sea of Japan
[Ref.: #6463]	Country	Russia
[Ref.: #6463]	Country ISO 3 Code	RUS
[Ref.: #6463]	Continent	Asia

[Ref.: #116233]	Sample type/isolated from	Environment, Sea water
[Ref.: #116233]	Geographic location (country and/or sea, region)	Amursky bay
[Ref.: #116233]	Country	Sea of Japan
[Ref.: #116233]	Isolation date	1999
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6463]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116233]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6463]	Pseudoalteromonas aliena 16S ribosomal RNA gene, partial sequence	AY387858	1531	ENA	247523 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas aliena SW19	GCA_014905615	chromosome	GenBank	1314866 tax ID	*
[Ref.: #66792]	Pseudoalteromonas aliena SW19	1314866.4	wgs	PATRIC	1314866 tax ID	*

[Ref.: #30194]

GC-content

41.1-42.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas aliena SW19 SW19 NCBI: GCA_014905615.1
[Ref.: #69480]	motile	yes	92.91	no
[Ref.: #69480]	flagellated	yes	90.377	no
[Ref.: #69480]	gram-positive	no	98.926	no
[Ref.: #69480]	anaerobic	no	96.541	no
[Ref.: #69480]	aerobic	yes	85.046	no
[Ref.: #69480]	halophile	no	54.296	no
[Ref.: #69480]	spore-forming	no	94.011	yes
[Ref.: #69480]	glucose-util	yes	91.117	yes
[Ref.: #69480]	thermophile	no	99.492	yes
[Ref.: #69480]	glucose-ferment	no	77.737	no

Availability in culture collections External links

[Ref.: #6463]

Culture collection no.

DSM 16473, KMM 3562, CIP 108625, LMG 22059

[Ref.: #81909]

SI-ID 126439

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas profundi sp. nov., isolated from a deep-sea seamount.	Zhang DC, Liu YX, Huang HJ, Wu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001366	2016	*
Genetics	Structure of an acidic polysaccharide from the marine bacterium Pseudoalteromonas aliena type strain KMM 3562T containing two residues of L-serine in the repeating unit.	Nordmark EL, Perepelov AV, Shashkov AS, Nazarenko EL, Gorshkova RP, Ivanova EP, Widmalm G	Carbohydr Res	10.1016/j.carres.2005.03.013	2005	*
Phylogeny	Characterization of Pseudoalteromonas distincta-like sea-water isolates and description of Pseudoalteromonas aliena sp. nov.	Ivanova EP, Gorshkova NM, Zhukova NV, Lysenko AM, Zelepuga EA, Prokof'eva NG, Mikhailov VV, Nicolau DV, Christen R	Int J Syst Evol Microbiol	10.1099/ijs.0.03053-0	2004	*

References

#6463

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16473

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30194

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26540 (see below)

#37446 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81909

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID126439.1 )

#116233 Collection of Institut Pasteur ; Curators of the CIP; CIP 108625

#26540

IJSEM 1431 2004 ( DOI 10.1099/ijs.0.03053-0 , PubMed 15388692 )

* These data were automatically processed and therefore are not curated

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Pseudoalteromonas aliena SW19 SW19

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