Strain identifier

BacDive ID: 12699

Type strain: Yes

Species: Pseudoalteromonas aliena

Strain Designation: SW19

Strain history: CIP <- 2005, E. Ivanova, Swinburne Univ., Hawthorn, Australia: strain SW19

NCBI tax ID(s): 247523 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6463

BacDive-ID: 12699

DSM-Number: 16473

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative, motile, rod-shaped

description: Pseudoalteromonas aliena SW19 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from sea water.

NCBI tax id

  • NCBI tax id: 247523
  • Matching level: species

strain history

@refhistory
6463<- E. Ivanova, Swinburne Univ. of Technol., IRIS, Australia; SW19 <- E. Ivanova; SW19
374462005, E. Ivanova, Swinburne Univ., Hawthorn, Australia: strain SW19
116233CIP <- 2005, E. Ivanova, Swinburne Univ., Hawthorn, Australia: strain SW19

doi: 10.13145/bacdive12699.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas aliena
  • full scientific name: Pseudoalteromonas aliena Ivanova et al. 2004

@ref: 6463

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas aliena

full scientific name: Pseudoalteromonas aliena Ivanova et al. 2004

strain designation: SW19

type strain: yes

Morphology

cell morphology

@refgram staincell widthcell shapemotility
30194negative0.7-0.9 µmrod-shapedyes
116233negativerod-shapedyes

pigmentation

  • @ref: 30194
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6463BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37446Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116233CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6463positivegrowth22psychrophilic
30194positivegrowth04-29
30194positiveoptimum23.5psychrophilic
37446positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
30194positivegrowth6.0-10.0alkaliphile
30194positiveoptimum7.75

Physiology and metabolism

oxygen tolerance

  • @ref: 116233
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 30194
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30194NaClpositivegrowth0.5-6 %
30194NaClpositiveoptimum3.25 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3019417234glucose+carbon source
3019417306maltose+carbon source
3019429864mannitol+carbon source
3019417992sucrose+carbon source
11623317632nitrate-reduction
11623316301nitrite-reduction

metabolite production

  • @ref: 116233
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
30194catalase+1.11.1.6
30194gelatinase+
30194cytochrome oxidase+1.9.3.1
116233oxidase+
116233catalase+1.11.1.6
116233urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116233-+-+-++---++-----+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
6463sea waterSea of JapanRussiaRUSAsia
116233Environment, Sea waterAmursky baySea of Japan1999

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
64631Risk group (German classification)
1162331Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6463
  • description: Pseudoalteromonas aliena 16S ribosomal RNA gene, partial sequence
  • accession: AY387858
  • length: 1531
  • database: ena
  • NCBI tax ID: 247523

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoalteromonas aliena SW19GCA_014905615chromosomencbi1314866
66792Pseudoalteromonas aliena SW191314866.4wgspatric1314866

GC content

  • @ref: 30194
  • GC-content: 41.1-42.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes92.91no
flagellatedyes90.377no
gram-positiveno98.926no
anaerobicno96.541no
aerobicyes85.046no
halophileno54.296no
spore-formingno94.011yes
glucose-utilyes91.117yes
thermophileno99.492yes
glucose-fermentno77.737no

External links

@ref: 6463

culture collection no.: DSM 16473, KMM 3562, CIP 108625, LMG 22059

straininfo link

  • @ref: 81909
  • straininfo: 126439

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15388692Characterization of Pseudoalteromonas distincta-like sea-water isolates and description of Pseudoalteromonas aliena sp. nov.Ivanova EP, Gorshkova NM, Zhukova NV, Lysenko AM, Zelepuga EA, Prokof'eva NG, Mikhailov VV, Nicolau DV, Christen RInt J Syst Evol Microbiol10.1099/ijs.0.03053-02004Anti-Bacterial Agents/pharmacology, Base Composition, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis, Gelatin/metabolism, Genes, rRNA, Hemolysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Monophenol Monooxygenase/metabolism, Pacific Ocean, Phylogeny, Pigments, Biological/biosynthesis, Polysorbates/metabolism, Pseudoalteromonas/*classification/genetics/isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/pharmacology, Starch/metabolism, Temperature, Water MicrobiologyMetabolism
Genetics15882858Structure of an acidic polysaccharide from the marine bacterium Pseudoalteromonas aliena type strain KMM 3562T containing two residues of L-serine in the repeating unit.Nordmark EL, Perepelov AV, Shashkov AS, Nazarenko EL, Gorshkova RP, Ivanova EP, Widmalm GCarbohydr Res10.1016/j.carres.2005.03.0132005Carbohydrate Sequence, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Polysaccharides/*chemistry/isolation & purification, Pseudoalteromonas/*chemistry/*classification, Serine/*analysisPhylogeny
Phylogeny27493151Pseudoalteromonas profundi sp. nov., isolated from a deep-sea seamount.Zhang DC, Liu YX, Huang HJ, Wu JInt J Syst Evol Microbiol10.1099/ijsem.0.0013662016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6463Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16473)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16473
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30194Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2654028776041
37446Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6275
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
81909Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID126439.1StrainInfo: A central database for resolving microbial strain identifiers
116233Curators of the CIPCollection of Institut Pasteur (CIP 108625)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108625