Strain identifier
BacDive ID: 12699
Type strain:
Species: Pseudoalteromonas aliena
Strain Designation: SW19
Strain history: CIP <- 2005, E. Ivanova, Swinburne Univ., Hawthorn, Australia: strain SW19
NCBI tax ID(s): 247523 (species)
General
@ref: 6463
BacDive-ID: 12699
DSM-Number: 16473
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative, motile, rod-shaped
description: Pseudoalteromonas aliena SW19 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from sea water.
NCBI tax id
- NCBI tax id: 247523
- Matching level: species
strain history
@ref | history |
---|---|
6463 | <- E. Ivanova, Swinburne Univ. of Technol., IRIS, Australia; SW19 <- E. Ivanova; SW19 |
37446 | 2005, E. Ivanova, Swinburne Univ., Hawthorn, Australia: strain SW19 |
116233 | CIP <- 2005, E. Ivanova, Swinburne Univ., Hawthorn, Australia: strain SW19 |
doi: 10.13145/bacdive12699.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas aliena
- full scientific name: Pseudoalteromonas aliena Ivanova et al. 2004
@ref: 6463
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas aliena
full scientific name: Pseudoalteromonas aliena Ivanova et al. 2004
strain designation: SW19
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell width | cell shape | motility |
---|---|---|---|---|
30194 | negative | 0.7-0.9 µm | rod-shaped | yes |
116233 | negative | rod-shaped | yes |
pigmentation
- @ref: 30194
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6463 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
37446 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
116233 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6463 | positive | growth | 22 | psychrophilic |
30194 | positive | growth | 04-29 | |
30194 | positive | optimum | 23.5 | psychrophilic |
37446 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30194 | positive | growth | 6.0-10.0 | alkaliphile |
30194 | positive | optimum | 7.75 |
Physiology and metabolism
oxygen tolerance
- @ref: 116233
- oxygen tolerance: obligate aerobe
spore formation
- @ref: 30194
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30194 | NaCl | positive | growth | 0.5-6 % |
30194 | NaCl | positive | optimum | 3.25 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30194 | 17234 | glucose | + | carbon source |
30194 | 17306 | maltose | + | carbon source |
30194 | 29864 | mannitol | + | carbon source |
30194 | 17992 | sucrose | + | carbon source |
116233 | 17632 | nitrate | - | reduction |
116233 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 116233
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
30194 | catalase | + | 1.11.1.6 |
30194 | gelatinase | + | |
30194 | cytochrome oxidase | + | 1.9.3.1 |
116233 | oxidase | + | |
116233 | catalase | + | 1.11.1.6 |
116233 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116233 | - | + | - | + | - | + | + | - | - | - | + | + | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
6463 | sea water | Sea of Japan | Russia | RUS | Asia | |
116233 | Environment, Sea water | Amursky bay | Sea of Japan | 1999 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6463 | 1 | Risk group (German classification) |
116233 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 6463
- description: Pseudoalteromonas aliena 16S ribosomal RNA gene, partial sequence
- accession: AY387858
- length: 1531
- database: ena
- NCBI tax ID: 247523
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pseudoalteromonas aliena SW19 | GCA_014905615 | chromosome | ncbi | 1314866 |
66792 | Pseudoalteromonas aliena SW19 | 1314866.4 | wgs | patric | 1314866 |
GC content
- @ref: 30194
- GC-content: 41.1-42.5
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 92.91 | no |
flagellated | yes | 90.377 | no |
gram-positive | no | 98.926 | no |
anaerobic | no | 96.541 | no |
aerobic | yes | 85.046 | no |
halophile | no | 54.296 | no |
spore-forming | no | 94.011 | yes |
glucose-util | yes | 91.117 | yes |
thermophile | no | 99.492 | yes |
glucose-ferment | no | 77.737 | no |
External links
@ref: 6463
culture collection no.: DSM 16473, KMM 3562, CIP 108625, LMG 22059
straininfo link
- @ref: 81909
- straininfo: 126439
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15388692 | Characterization of Pseudoalteromonas distincta-like sea-water isolates and description of Pseudoalteromonas aliena sp. nov. | Ivanova EP, Gorshkova NM, Zhukova NV, Lysenko AM, Zelepuga EA, Prokof'eva NG, Mikhailov VV, Nicolau DV, Christen R | Int J Syst Evol Microbiol | 10.1099/ijs.0.03053-0 | 2004 | Anti-Bacterial Agents/pharmacology, Base Composition, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis, Gelatin/metabolism, Genes, rRNA, Hemolysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Monophenol Monooxygenase/metabolism, Pacific Ocean, Phylogeny, Pigments, Biological/biosynthesis, Polysorbates/metabolism, Pseudoalteromonas/*classification/genetics/isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/pharmacology, Starch/metabolism, Temperature, Water Microbiology | Metabolism |
Genetics | 15882858 | Structure of an acidic polysaccharide from the marine bacterium Pseudoalteromonas aliena type strain KMM 3562T containing two residues of L-serine in the repeating unit. | Nordmark EL, Perepelov AV, Shashkov AS, Nazarenko EL, Gorshkova RP, Ivanova EP, Widmalm G | Carbohydr Res | 10.1016/j.carres.2005.03.013 | 2005 | Carbohydrate Sequence, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Polysaccharides/*chemistry/isolation & purification, Pseudoalteromonas/*chemistry/*classification, Serine/*analysis | Phylogeny |
Phylogeny | 27493151 | Pseudoalteromonas profundi sp. nov., isolated from a deep-sea seamount. | Zhang DC, Liu YX, Huang HJ, Wu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001366 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
6463 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16473) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16473 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30194 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26540 | 28776041 | |
37446 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6275 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68382 | Automatically annotated from API zym | |||||
81909 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID126439.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116233 | Curators of the CIP | Collection of Institut Pasteur (CIP 108625) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108625 |