Pseudoalteromonas marina (DSM 17587, KCTC 12242, mano4)

Name: Pseudoalteromonas marina (DSM 17587, KCTC 12242, mano4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12700

Type strain

Strain Designation mano4, 31.101

Culture col. no. DSM 17587 KCTC 12242 mano4 31.101

NCBI tax ID(s) 1117316 267375

Special Collections DSMZ KCTC

History <- J.-W. Bae, KRIBB; mano4 <- JW Bae, KRIBB

Links

Pseudoalteromonas marina mano4 is an aerobe, Gram-negative bacterium that was isolated from tidal flat sediment.

Gram-negative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 232782

KCTC 12242,DSM 17587

@ref 20215

Last LPSN update 2026-02-09 11:20:55

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Pseudoalteromonadaceae

Genus Pseudoalteromonas

Species Pseudoalteromonas marina

Full scientific name Pseudoalteromonas marina Nam et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	negative
125438	negative	100
125439	negative	99.8

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7074	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 40.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7074	positive	growth	25
67771	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	97.9

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7074	tidal flat sediment	Chung-Nam, Dae-Chun	Republic of Korea	KOR	Asia
67771	From west sea		Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7074	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM23833v4 assembly for Pseudoalteromonas marina DSM 17587	chromosome	GCA_000238335	1117316.3	2541047158	267375	87.51

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7074	Pseudoalteromonas marina strain mano4 16S ribosomal RNA gene, partial sequence	AY563031	1371		267375

GC content

7074

GC-content (mol%)41.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoalteromonas marina mano4
PATRIC: 1117316.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	motility	BacteriaNetⓘ	yes	59.40	no
125439	spore_formation	BacteriaNetⓘ	no	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoalteromonas marina DSM 17587
NCBI: GCA_000238335.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	95.79	no
125438	aerobic	aerobicⓘ	yes	75.33	yes
125438	spore-forming	spore-formingⓘ	no	88.73	no
125438	thermophilic	thermophileⓘ	no	97.94	yes
125438	flagellated	motile2+ⓘ	yes	87.09	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Characterization and genomic analysis of phage vB_ValR_NF, representing a new viral family prevalent in the Ulva prolifera blooms.	Zhang X, Liang Y, Zheng K, Wang Z, Dong Y, Liu Y, Ren L, Wang H, Han Y, McMinn A, Sung YY, Mok WJ, Wong LL, He J, Wang M.	Front Microbiol	10.3389/fmicb.2023.1161265	2023
Phylogeny	Pseudoalteromonas marina sp. nov., a marine bacterium isolated from tidal flats of the Yellow Sea, and reclassification of Pseudoalteromonas sagamiensis as Algicola sagamiensis comb. nov.	Nam YD, Chang HW, Park JR, Kwon HY, Quan ZX, Park YH, Lee JS, Yoon JH, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.64523-0	2007

References

#7074	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17587
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudoalteromonas marina (DSM 17587, KCTC 12242, mano4)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000238335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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