Propionicicella superfundia BL-10 | Type strain | DSM 22317, ATCC BAA-1218, LMG 23096, JCM 14922 | BacDiveID:12670

Strain identifier

BacDive ID: 12670

Type strain:

Species: Propionicicella superfundia

Strain Designation: BL-10

Culture col. no.: DSM 22317, ATCC BAA-1218, LMG 23096, JCM 14922

Strain history: LMG 23096 <-- W. M. Moe BL-10 <-- H.-S. Bae.

NCBI tax ID(s): 1122999 (strain), 348582 (species)

SI-ID 139556

LMG 23096, ATCC BAA-1218, JCM 14922, DSM 22317

Section

Propionicicella superfundia BL-10 is an anaerobe, mesophilic bacterium that was isolated from groundwater contaminated by chlorosolvents and petroleum hydrocarbons.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Propionicicella*
	Species	**Propionicicella superfundia**
	Full Scientific Name (LPSN)	Propionicicella superfundia Bae et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.234

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16278]			growth	30 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #16278]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %93
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

[Ref.: #16278]	Murein short key	A31
[Ref.: #16278]	Murein types	A1gamma m-Dpm-direct

Observation

quinones: MK-9

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]		arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]		D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]		L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]		nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]		tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]		urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68380]		alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]		alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]		alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]		alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]		alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]		arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]		beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]		beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]		beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]		beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]		glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]		glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]		glycin arylamidase	+		* from API rID32A
[Ref.: #68380]		histidine arylamidase	-		* from API rID32A
[Ref.: #68380]		leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]		phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]		proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]		pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]		serine arylamidase	-		* from API rID32A
[Ref.: #68380]		tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]		tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]		urease	-	3.5.1.5	* from API rID32A
		Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #16278]	12759	-	-	-	-	-	+/-	+	-	-	-	+	+/-	-	-	-	-	-	+/-	+	+/-	+	+	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16278]	Sample type/isolated from	groundwater contaminated by chlorosolvents and petroleum hydrocarbons
[Ref.: #16278]	Geographic location (country and/or sea, region)	Louisiana, Baton Rouge
[Ref.: #16278]	Country	USA
[Ref.: #16278]	Country ISO 3 Code	USA
[Ref.: #16278]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Chlorosolvent-contaminated groundwater
[Ref.: #67770]	Geographic location (country and/or sea, region)	Brooklawn site, Baton Rouge, LA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Aquatic	#Groundwater

What are isolation sources categories?

Global distribution of 16S sequence DQ176646 (>99% sequence identity) for Propionicimonas from Microbeatlas

Aquatic Samples	588
Soil Samples	221
Animal Samples	528
Plant Samples	68
Total Samples	1405

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16278]	Propionicicella superfundia strain BL-10T 16S ribosomal RNA gene, partial sequence	DQ176646	1469	ENA	348582 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Propionicicella superfundia DSM 22317	GCA_000423465	scaffold	GenBank	1122999 tax ID
[Ref.: #66792]	Propionicicella superfundia DSM 22317	1122999.3	wgs	PATRIC	1122999 tax ID	*
[Ref.: #66792]	Propionicicella superfundia DSM 22317	2523231070	draft	JGI IMG/M	1122999 tax ID	*

[Ref.: #16278]	GC-content	69.9 mol%
[Ref.: #67770]	GC-content	69.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Propionicicella superfundia DSM 22317 DSM 22317 NCBI: GCA_000423465.1
[Ref.: #69481]	spore-forming	no	93	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Propionicicella superfundia DSM 22317 PATRIC: 1122999.3
[Ref.: #69480]	motile	no	93.948	no
[Ref.: #69480]	flagellated	no	97.806	no
[Ref.: #69480]	gram-positive	yes	80.498	no
[Ref.: #69480]	anaerobic	no	69.029	yes
[Ref.: #69480]	aerobic	no	78.802	yes
[Ref.: #69480]	halophile	no	94.563	no
[Ref.: #69480]	spore-forming	no	89.195	no
[Ref.: #69480]	glucose-util	yes	83.606	no
[Ref.: #69480]	thermophile	no	95.177	no
[Ref.: #69480]	glucose-ferment	no	64.972	no

Availability in culture collections External links

Culture collection no.

DSM 22317, ATCC BAA-1218, LMG 23096, JCM 14922

SI-ID 139556

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Propionicicella superfundia gen. nov., sp. nov., a chlorosolvent-tolerant propionate-forming, facultative anaerobic bacterium isolated from contaminated groundwater.	Bae HS, Moe WM, Yan J, Tiago I, da Costa MS, Rainey FA	Syst Appl Microbiol	10.1016/j.syapm.2005.11.004	2005	*

References

#16278

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22317

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81881

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID139556.1 )

* These data were automatically processed and therefore are not curated

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