Aestuariimicrobium kwangyangense (DSM 21549, JCM 14204, KCTC 19182)

Name: Aestuariimicrobium kwangyangense (DSM 21549, JCM 14204, KCTC 19182)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12671

Type strain

Strain Designation R27

Culture col. no. DSM 21549 JCM 14204 KCTC 19182 R27 CIP 109737

NCBI tax ID(s) 1120954 396389

Special Collections DSMZ JCM KCTC CIP Literature strains

History <- JCM <- J.-H. Yoon; R27 J.-H. Yoon R27. <- JH Yoon, KRIBB CIP <- 2007, JCM <- 2006, J.H. Yoon, KRIBB, Taejon, Korea: strain R27

Links

Aestuariimicrobium kwangyangense R27 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from oil-contaminated tidal flat sediment.

Gram-positive coccus-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 309523

KCTC 19182,JCM 14204,CIP 109737,DSM 21549

@ref 20215

Last LPSN update 2026-02-09 11:20:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Propionibacteriaceae

Genus Aestuariimicrobium

Species Aestuariimicrobium kwangyangense

Full scientific name Aestuariimicrobium kwangyangense Jung et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32073	positive	0.8-1.0 µm	0.8-1.0 µm	coccus-shaped
67771	positive
120520	positive			oval-shaped
125438					95.5
125439	positive				98

Multimedia

@ref:	66793
multimedia content:	EM_DSM_21549_1.jpg
multimedia.multimedia content:	EM_DSM_21549_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_21549_2.jpg
multimedia.multimedia content:	EM_DSM_21549_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_21549_3.jpg
multimedia.multimedia content:	EM_DSM_21549_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_21549_4.jpg
multimedia.multimedia content:	EM_DSM_21549_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15788	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
37828	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
120520	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15788	positive	growth	28	mesophilic
32073	positive	growth	04-40
32073	positive	optimum	30	mesophilic
37828	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32073	positive	optimum	8
32073	positive	growth	7.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32073	aerobe
67771	aerobe
120520	obligate aerobe
125439	obligate aerobe	99.3

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32073	17057 ChEBI	cellobiose	+	carbon source
32073	4853 ChEBI	esculin	+	hydrolysis
32073	28757 ChEBI	fructose	+	carbon source
32073	28260 ChEBI	galactose	+	carbon source
32073	17234 ChEBI	glucose	+	carbon source
32073	17716 ChEBI	lactose	+	carbon source
32073	17306 ChEBI	maltose	+	carbon source
32073	37684 ChEBI	mannose	+	carbon source
32073	28053 ChEBI	melibiose	+	carbon source
32073	17632 ChEBI	nitrate	+	reduction
120520	17632 ChEBI	nitrate	+	reduction
120520	16301 ChEBI	nitrite	-	reduction
32073	16634 ChEBI	raffinose	+	carbon source
32073	26546 ChEBI	rhamnose	+	carbon source
32073	17814 ChEBI	salicin	+	carbon source
32073	30911 ChEBI	sorbitol	+	carbon source
32073	17992 ChEBI	sucrose	+	carbon source
32073	27082 ChEBI	trehalose	+	carbon source
32073	53424 ChEBI	tween 20	+	carbon source
32073	53423 ChEBI	tween 40	+	carbon source
32073	53425 ChEBI	tween 60	+	carbon source
32073	53426 ChEBI	tween 80	+	carbon source
32073	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120520	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
32073	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
32073	alpha-galactosidase	+	3.2.1.22
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
32073	catalase	+	1.11.1.6
120520	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
120520	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
120520	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120520	-	-	+	+	-	+	-	-	+	-	+	-	+	+	+	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15788	oil-contaminated tidal flat sediment	Kwangyang	Republic of Korea	KOR	Asia
67770	Oil-contaminated tidal flat sediment	Kwangyang	Republic of Korea	KOR	Asia
67771	From enrichment with degradation activity of diesel oil		Republic of Korea	KOR	Asia
120520	Environment, Oil-contaminated tidal flat sediment	Kwangyang	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ830982 (>99% sequence identity) for Aestuariimicrobium kwangyangense subclade from Microbeatlas

Aquatic Samples	703
Soil Samples	600
Animal Samples	987
Plant Samples	144
Total Samples	2434

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15788	1	Risk group (German classification) According to TRBA 466
120520	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42152v1 assembly for Aestuariimicrobium kwangyangense DSM 21549	contig	GCA_000421525	1120954.3	2523533600	1120954	77.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15788	Aestuariimicrobium kwangyangense strain R27 16S ribosomal RNA gene, partial sequence	DQ830982	1472		396389

GC content

@ref	GC-content (mol%)	Method
15788	68.8
32073	68.8-69.2
67770	68.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aestuariimicrobium kwangyangense DSM 21549
NCBI: GCA_000421525

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	82.20	no
125439	motility	BacteriaNetⓘ	no	67.20	no
125439	gram_stain	BacteriaNetⓘ	positive	98.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aestuariimicrobium kwangyangense DSM 21549
PATRIC: 1120954.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.23	no
125438	anaerobic	anaerobicⓘ	no	89.00	yes
125438	spore-forming	spore-formingⓘ	no	72.24	no
125438	aerobic	aerobicⓘ	yes	63.67	no
125438	thermophilic	thermophileⓘ	no	96.08	yes
125438	flagellated	motile2+ⓘ	no	95.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Effect of milk bactofugation on the counts and diversity of thermoduric bacteria.	Ribeiro-Junior JC, Tamanini R, Alfieri AA, Beloti V.	J Dairy Sci	10.3168/jds.2020-18591	2020
Genetics	Tessaracoccus massiliensis sp. nov., a new bacterial species isolated from the human gut.	Seck E, Traore SI, Khelaifia S, Beye M, Michelle C, Couderc C, Brah S, Fournier PE, Raoult D, Dubourg G.	New Microbes New Infect	10.1016/j.nmni.2016.05.002	2016
Phylogeny	Aestuariimicrobium soli sp. nov., isolated from farmland soil, and emended description of the genus Aestuariimicrobium.	Chen LL, Chen F, Zhao HZ, Feng ZZ, Zhang H, Huang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002986	2018
Phylogeny	Aestuariimicrobium kwangyangense gen. nov., sp. nov., an LL-diaminopimelic acid-containing bacterium isolated from tidal flat sediment.	Jung SY, Kim HS, Song JJ, Lee SG, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.64917-0	2007

References

#15788	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21549
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28320	IJSEM 2114 2007 ( DOI 10.1099/ijs.0.64917-0 , PubMed 17766882 )
#32073	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28320
#37828	; Curators of the CIP;
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120520	Collection of Institut Pasteur ; Curators of the CIP; CIP 109737
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aestuariimicrobium kwangyangense (DSM 21549, JCM 14204, KCTC 19182)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000421525

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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