Name: Cutibacterium acnes DSM 16379
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12637

Type strain:

Species: Cutibacterium acnes

Culture col. no.: DSM 16379, KPA 171202

Strain history: <- P. Dürre; KPA171202 <- S. Hujer

NCBI tax ID(s): 1747 (species)

SI-ID 215483

DSM 16379

Special Collections

DSMZ

Other strains from Cutibacterium acnes

Section

Cutibacterium acnes DSM 16379 is an anaerobe, Gram-positive bacterium that was isolated from contamination of an anaerobic culture.

Gram-positive
anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Cutibacterium*
	Species	**Cutibacterium acnes**
	Full Scientific Name (LPSN)	Cutibacterium acnes (Gilchrist 1900) Scholz and Kilian 2016

	Synonym	"Bacillus* acnes"*
	Synonym	Propionibacterium acnes

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %94

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6416]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #6416]

Culture medium growth

[Ref.: #6416]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6416]

Culture medium composition

expand / minimize

[Ref.: #6416]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6416]

Culture medium growth

[Ref.: #6416]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6416]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6416]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6416]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	+	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #6416]	13327	-	-	-	+/-	-	+	-	-	-	+	+	-	-	-	+	+	-	+/-	+	-	-	-	+/-	-	+	+	-	-	+
[Ref.: #6416]	13091	-	+	-	+/-	-	+	-	-	-	+/-	+	-	-	-	+	+	-	-	+	-	-	-	-	-	+	+	-	-	+
[Ref.: #6416]	12632	-	+	-	-	-	+	-	-	-	+	+	-	-	-	+	+	-	-	+	-	-	-	-	-	+	+	-	-	+
[Ref.: #6416]	12631	-	+	-	+	-	+	-	-	-	+	+	-	-	-	+	+/-	-	+	+	-	-	-	-	-	+	+	-	-	+
[Ref.: #6416]	12630	-	+	-	+	-	+	-	-	+/-	+/-	-	-	-	-	+	-	-	+	+	+/-	-	-	-	-	+	+	-	-	+
[Ref.: #6416]	12629	-	-	-	+/-	-	+	-	-	+	+	+	-	-	-	+	-	-	+/-	+	-	-	-	-	-	+/-	+/-	-	-	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6416]	Sample type/isolated from	contamination of an anaerobic culture
[Ref.: #6416]	Geographic location (country and/or sea, region)	Ulm
[Ref.: #6416]	Country	Germany
[Ref.: #6416]	Country ISO 3 Code	DEU
[Ref.: #6416]	Continent	Europe
[Ref.: #6416]	Geographic location	48.4011°/9.9876°
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Laboratory	#Lab enrichment
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6416]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cutibacterium acnes KPA171202	267747.46	complete	PATRIC	267747 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cutibacterium acnes KPA171202 PATRIC: 267747.46
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cutibacterium acnes KPA171202 PATRIC: 267747.46
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.598	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	63.23	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	78.981	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	68.81	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.977	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94	no

Availability in culture collections External links

[Ref.: #6416]

Culture collection no.

DSM 16379, KPA 171202

[Ref.: #81850]

SI-ID 215483

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Engineering selectivity of Cutibacterium acnes phages by epigenetic imprinting.	Knodlseder N, Nevot G, Fabrega MJ, Mir-Pedrol J, Sanvicente-Garcia M, Campama-Sanz N, Paetzold B, Lood R, Guell M	PLoS Pathog	10.1371/journal.ppat.1010420	2022	*
Genetics	In vitro emergence of fluoroquinolone resistance in Cutibacterium (formerly Propionibacterium) acnes and molecular characterization of mutations in the gyrA gene.	Takoudju EM, Guillouzouic A, Kambarev S, Pecorari F, Corvec S	Anaerobe	10.1016/j.anaerobe.2017.06.005	2017	*
Genetics	Analysis of complete genomes of Propionibacterium acnes reveals a novel plasmid and increased pseudogenes in an acne associated strain.	Kasimatis G, Fitz-Gibbon S, Tomida S, Wong M, Li H	Biomed Res Int	10.1155/2013/918320	2013	*
Genetics	Comparative genomics and transcriptomics of Propionibacterium acnes.	Brzuszkiewicz E, Weiner J, Wollherr A, Thurmer A, Hupeden J, Lomholt HB, Kilian M, Gottschalk G, Daniel R, Mollenkopf HJ, Meyer TF, Bruggemann H	PLoS One	10.1371/journal.pone.0021581	2011	*
Enzymology	Expression, purification, crystallization and preliminary X-ray diffraction analysis of the soluble domain of PPA0092, a putative nitrite reductase from Propionibacterium acnes.	Nojiri M, Shirota F, Hira D, Suzuki S	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309108040207	2009	*
Genetics	Complete Genome Sequences and Methylome Analyses of Cutibacterium acnes subsp. acnes Strains DSM 16379 and DSM 1897(T).	Deptula P, Laine P, Paulin L, Auvinen P, Roberts RJ, Johnston CD, Varmanen P	Microbiol Resour Announc	10.1128/MRA.00705-20	2020	*
Enzymology	Characterization of beta-1,3-galactosyl-N-acetylhexosamine phosphorylase from Propionibacterium acnes.	Nakajima M, Nishimoto M, Kitaoka M	Appl Microbiol Biotechnol	10.1007/s00253-008-1838-y	2009	*
Phylogeny	A new phylogenetic group of Propionibacterium acnes.	McDowell A, Perry AL, Lambert PA, Patrick S	J Med Microbiol	10.1099/jmm.0.47489-0	2008	*
	In silico prediction and qPCR validation of novel sRNAs in Propionibacterium acnes KPA171202.	Balgir PP, Dhiman SR, Kaur P	J Genet Eng Biotechnol	10.1016/j.jgeb.2016.03.002	2016	*

References

#6416

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16379

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81850

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215483.1 )

* These data were automatically processed and therefore are not curated

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Cutibacterium acnes KPA171202

Cutibacterium acnes KPA171202

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