Name: Promicromonospora sukumoe DSM 44121
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12601

Type strain:

Species: Promicromonospora sukumoe

Culture col. no.: DSM 44121, IFO 14650, JCM 6845, NBRC 14650, VKM Ac-1966

Strain history: S. ?mura SK-2049.

NCBI tax ID(s): 88382 (species)

SI-ID 125938

DSM 44121, IFO 14650, JCM 6845, VKM Ac-1966, NBRC 14650

Special Collections

DSMZ
JCM

Other strains from Promicromonospora sukumoe

Section

Promicromonospora sukumoe DSM 44121 is a bacterium that produces amino acids and was isolated from soil.

amino acid production
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Promicromonospora*
	Species	**Promicromonospora sukumoe**
	Full Scientific Name (LPSN)	Promicromonospora sukumoe Takahashi et al. 1988

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %92.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11416]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11416]

Culture medium growth

[Ref.: #11416]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11416]

Culture medium composition

expand / minimize

[Ref.: #11416]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #11416]

Culture medium growth

[Ref.: #11416]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11416]

Culture medium composition

expand / minimize

[Ref.: #11416]

Culture medium

YEAST STARCH AGAR (A) (DSMZ Medium 1027)

[Ref.: #11416]

Culture medium growth

[Ref.: #11416]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11416]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11416]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #11416]

Name of produced compound

7-hydro-8 methylpteroylglutamylglutamic acid

[Ref.: #11416]	Murein short key	A11.59
[Ref.: #11416]	Murein types	A4alpha L-Lys-L-Ala-D-Glu

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9, MK-9(H₂), MK-9(H₆)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		7-Hydro-8-methylpteroylglutamylglutamic acid	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11416]	Sample type/isolated from	soil
[Ref.: #11416]	Geographic location (country and/or sea, region)	Sukumo City, Kochi prefecture
[Ref.: #11416]	Country	Japan
[Ref.: #11416]	Country ISO 3 Code	JPN
[Ref.: #11416]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sukumo City, Kochi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11416]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Promicromonospora sukumoe partial 16S rRNA gene for 16S ribosomal RNA, strain type DSM 44121	AJ272024	1460	GenBank ENA	88382 tax ID	*
[Ref.: #20218]	Promicromonospora sukumoe gene for 16S rRNA, strain:IFO 14650T	AB023375	1487	GenBank ENA	88382 tax ID	*
[Ref.: #20218]	Promicromonospora sukumoe gene for 16S rRNA, partial sequence	AB056130	1488	GenBank ENA	88382 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Promicromonospora sukumoe DSM 44121	GCA_014137995	contig	GenBank ENA	88382 tax ID	*
[Ref.: #66792]	Promicromonospora sukumoe strain DSM 44121	88382.4	wgs	PATRIC	88382 tax ID	*
[Ref.: #66792]	Promicromonospora sukumoe DSM 44121	2820964733	draft	JGI IMG/M	88382 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Promicromonospora sukumoe strain DSM 44121 PATRIC: 88382.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.529	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.919	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.584	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	65.759	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

[Ref.: #11416]

Culture collection no.

DSM 44121, IFO 14650, JCM 6845, NBRC 14650, VKM Ac-1966

[Ref.: #81815]

SI-ID 125938

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Promicromonospora callitridis sp. nov., an endophytic actinobacterium isolated from the surface-sterilized root of an Australian native pine tree.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002165	2017	*
Phylogeny	Promicromonospora umidemergens sp. nov., isolated from moisture from indoor wall material.	Martin K, Schafer J, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.014142-0	2009	*
Phylogeny	Promicromonospora kroppenstedtii sp. nov., isolated from sandy soil.	Alonso-Vega P, Santamaria RI, Martinez-Molina E, Trujillo ME	Int J Syst Evol Microbiol	10.1099/ijs.0.65458-0	2008	*
Phylogeny	Promicromonospora vindobonensis sp. nov. and Promicromonospora aerolata sp. nov., isolated from the air in the medieval 'Virgilkapelle' in Vienna.	Busse HJ, Zlamala C, Buczolits S, Lubitz W, Kampfer P, Takeuchi M	Int J Syst Evol Microbiol	10.1099/ijs.0.02522-0	2003	*

References

#11416

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44121

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81815

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125938.1 )

* These data were automatically processed and therefore are not curated

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Promicromonospora sukumoe strain DSM 44121

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