Name: Promicromonospora citrea DSM 43110
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12591

Type strain:

Species: Promicromonospora citrea

Culture col. no.: DSM 43110, ATCC 15908, IMET 7267, INMI 18, JCM 3051, KCC A-0051, RIA 562, CGMCC 4.1485, IFM 1286, IFO 12397, IMSNU 20110, KCTC 9069, LMG 4076, MTCC 271, NBIMCC 1485, NBRC 12397, NCIMB 12149, NRRL B-3485, VKM Ac-665

Strain history: KCC A-0051 <-- RIA 562 <-- INMI 18.

NCBI tax ID(s): 43677 (species)

SI-ID 13746

LMG 4076, ATCC 15908, DSM 43110, IFO 12397, IMET 7267, JCM 3051, NCIB 12149, NCIMB 12149, NRRL B-3485, VKM Ac-665, KCTC 9069, NBRC 12397, NBIMCC 1485, CGMCC 4.1485

Special Collections

Promicromonospora phage P1

Other strains from Promicromonospora citrea

Section

Promicromonospora citrea DSM 43110 is a bacterium that was isolated from garden soil.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Promicromonospora*
	Species	**Promicromonospora citrea**
	Full Scientific Name (LPSN)	Promicromonospora citrea Krassilnikov et al. 1961 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %92

[Ref.: #19938]	Colony color	Lemon yellow (1012)
[Ref.: #19938]	Incubation period	10-14 days
[Ref.: #19938]	Cultivation medium used	ISP 2

[Ref.: #19938]	Colony color	Lemon yellow (1012)
[Ref.: #19938]	Incubation period	10-14 days
[Ref.: #19938]	Cultivation medium used	ISP 3

[Ref.: #19938]	Colony color	Lemon yellow (1012)
[Ref.: #19938]	Incubation period	10-14 days
[Ref.: #19938]	Cultivation medium used	ISP 4

[Ref.: #19938]	Colony color	Lemon yellow (1012)
[Ref.: #19938]	Incubation period	10-14 days
[Ref.: #19938]	Cultivation medium used	ISP 5

[Ref.: #19938]	Colony color	Lemon yellow (1012)
[Ref.: #19938]	Incubation period	10-14 days
[Ref.: #19938]	Cultivation medium used	ISP 6

[Ref.: #19938]	Colony color	Lemon yellow (1012)
[Ref.: #19938]	Incubation period	10-14 days
[Ref.: #19938]	Cultivation medium used	ISP 7

[Ref.: #19938]	Multicellular complex forming ability	no
[Ref.: #19938]	Medium Name (multicellularity)	ISP 2

[Ref.: #19938]	Multicellular complex forming ability	no
[Ref.: #19938]	Medium Name (multicellularity)	ISP 3

[Ref.: #19938]	Multicellular complex forming ability	no
[Ref.: #19938]	Medium Name (multicellularity)	ISP 4

[Ref.: #19938]	Multicellular complex forming ability	no
[Ref.: #19938]	Medium Name (multicellularity)	ISP 5

[Ref.: #19938]	Multicellular complex forming ability	no
[Ref.: #19938]	Medium Name (multicellularity)	ISP 6

[Ref.: #19938]	Multicellular complex forming ability	no
[Ref.: #19938]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10773]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #10773]

Culture medium growth

[Ref.: #10773]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10773]

Culture medium composition

expand / minimize

[Ref.: #10773]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10773]

Culture medium growth

[Ref.: #10773]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10773]

Culture medium composition

expand / minimize

[Ref.: #19938]

Culture medium

ISP 2

[Ref.: #19938]

Culture medium growth

[Ref.: #19938]

Culture medium composition

expand / minimize

[Ref.: #19938]

Culture medium

ISP 3

[Ref.: #19938]

Culture medium growth

[Ref.: #19938]

Culture medium composition

expand / minimize

[Ref.: #19938]

Culture medium

ISP 4

[Ref.: #19938]

Culture medium growth

[Ref.: #19938]

Culture medium composition

expand / minimize

[Ref.: #19938]

Culture medium

ISP 5

[Ref.: #19938]

Culture medium growth

[Ref.: #19938]

Culture medium composition

expand / minimize

[Ref.: #19938]

Culture medium

ISP 6

[Ref.: #19938]

Culture medium growth

[Ref.: #19938]

Culture medium composition

expand / minimize

[Ref.: #19938]

Culture medium

ISP 7

[Ref.: #19938]

Culture medium growth

[Ref.: #19938]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10773]	growth	28 °C
[Ref.: #19938]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.206

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19938]		NaCl		maximum	2.5	%

[Ref.: #10773]	Murein short key	A11.59
[Ref.: #10773]	Murein types	A4alpha L-Lys-L-Ala-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19938]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19938]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19938]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19938]	glucose ChEBI	+/-
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19938]	mannitol ChEBI	+
[Ref.: #19938]	myo-inositol ChEBI	+/-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19938]	raffinose ChEBI	+
[Ref.: #19938]	rhamnose ChEBI	+
[Ref.: #19938]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19938]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19938]	546	-	+	+	+	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10773]	Sample type/isolated from	garden soil

[Ref.: #67770]	Sample type/isolated from	Garden soil
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X83808 (>99% sequence identity) for Promicromonospora from Microbeatlas

Aquatic Samples	57
Soil Samples	474
Animal Samples	703
Plant Samples	462
Total Samples	1696

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10773]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19938]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	P.citrea 16S rRNA gene	X83808	1453	GenBank ENA	43677 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Promicromonospora citrea ATCC 15908	GCA_013004695	contig	GenBank ENA	43677 tax ID
[Ref.: #66792]	Promicromonospora citrea JCM 3051	GCA_014647735	contig	GenBank ENA	43677 tax ID	*
[Ref.: #66792]	Promicromonospora citrea strain ATCC 15908	43677.3	wgs	PATRIC	43677 tax ID	*
[Ref.: #66792]	Promicromonospora citrea strain JCM 3051	43677.4	wgs	PATRIC	43677 tax ID	*

[Ref.: #67770]

GC-content

73.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Promicromonospora citrea strain JCM 3051 PATRIC: 43677.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	82	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Promicromonospora citrea strain ATCC 15908 PATRIC: 43677.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.991	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.581	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	58.812	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.206	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.977	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92	no

Availability in culture collections External links

[Ref.: #10773]

Culture collection no.

DSM 43110, ATCC 15908, IMET 7267, INMI 18, JCM 3051, KCC A-0051, RIA 562, CGMCC 4.1485, IFM 1286, IFO 12397, IMSNU 20110, KCTC 9069, LMG 4076, MTCC 271, NBIMCC 1485, NBRC 12397, NCIMB 12149, NRRL B-3485, VKM Ac-665

[Ref.: #81805]

SI-ID 13746


[Ref.: #124042]	Promicromonospora phage P1

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Promicromonospora viridis sp. nov., a novel actinomycete isolated from soil.	Jin L, Zhao J, Jiang S, Zhao Y, Han X, Guo X, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-018-1099-4	2018	*
Phylogeny	Promicromonospora thailandica sp. nov., isolated from marine sediment.	Thawai C, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.035972-0	2011	*
Phylogeny	Promicromonospora umidemergens sp. nov., isolated from moisture from indoor wall material.	Martin K, Schafer J, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.014142-0	2009	*
Phylogeny	Promicromonospora kroppenstedtii sp. nov., isolated from sandy soil.	Alonso-Vega P, Santamaria RI, Martinez-Molina E, Trujillo ME	Int J Syst Evol Microbiol	10.1099/ijs.0.65458-0	2008	*
Phylogeny	Promicromonospora vindobonensis sp. nov. and Promicromonospora aerolata sp. nov., isolated from the air in the medieval 'Virgilkapelle' in Vienna.	Busse HJ, Zlamala C, Buczolits S, Lubitz W, Kampfer P, Takeuchi M	Int J Syst Evol Microbiol	10.1099/ijs.0.02522-0	2003	*

References

#10773

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43110

#19938

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81805

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13746.1 )

#124042

Dr. Johannes Wittmann, Dr. Clara Rolland, Dr. Lorenz Reimer, Joaquim Sardà: PhageDive .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Promicromonospora citrea in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Promicromonospora citrea strain JCM 3051

Promicromonospora citrea strain ATCC 15908

Change proposal

Change proposal