Name: Isoptericola variabilis MX5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12583

Type strain:

Species: Isoptericola variabilis

Strain Designation: MX5

Culture col. no.: DSM 10177, ATCC BAA-303, CIP 109082, JCM 11754, KCTC 9985, NBRC 104115

Strain history: CIP <- 2005, JCM <- H. König <- A. Schäfer: strain MX5

NCBI tax ID(s): 1305623 (strain), 139208 (species)

SI-ID 100586

ATCC BAA-303, DSM 10177, JCM 11754, KCTC 9985, CIP 109082, NBRC 104115

Special Collections

Section

When using BacDive for research please cite our paper

Isoptericola variabilis MX5 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from hindgut of termite Mastotermes darwiniensis.

Gram-positive
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Isoptericola*
	Species	**Isoptericola variabilis**
	Full Scientific Name (LPSN)	Isoptericola variabilis (Bakalidou et al. 2002) Stackebrandt et al. 2004

	Synonym	Cellulosimicrobium variabile
	Synonym	"Cellulomonas* variformis"*

Information on morphological and physiological properties Morphology

[Ref.: #22921]	Gram stain	positive
[Ref.: #123799]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %99.8

[Ref.: #123799]	Cell shape	oval-shaped

[Ref.: #123799]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %92.167

[Ref.: #18428]	Colony color	Colorless
[Ref.: #18428]	Incubation period	10-14 days
[Ref.: #18428]	Cultivation medium used	ISP 2

[Ref.: #18428]	Colony color	Beige (1001)
[Ref.: #18428]	Incubation period	10-14 days
[Ref.: #18428]	Cultivation medium used	ISP 3

[Ref.: #18428]	Colony color	Beige (1001)
[Ref.: #18428]	Incubation period	10-14 days
[Ref.: #18428]	Cultivation medium used	ISP 4

[Ref.: #18428]	Colony color	Beige (1001)
[Ref.: #18428]	Incubation period	10-14 days
[Ref.: #18428]	Cultivation medium used	ISP 5

[Ref.: #18428]	Colony color	Beige (1001)
[Ref.: #18428]	Incubation period	10-14 days
[Ref.: #18428]	Cultivation medium used	ISP 6

[Ref.: #18428]	Colony color	Beige (1001)
[Ref.: #18428]	Incubation period	10-14 days
[Ref.: #18428]	Cultivation medium used	ISP 7

[Ref.: #22921]	Colony color	yellow
[Ref.: #22921]	Cultivation medium used	PYGV medium

[Ref.: #18428]	Multicellular complex forming ability	no
[Ref.: #18428]	Medium Name (multicellularity)	ISP 2

[Ref.: #18428]	Multicellular complex forming ability	no
[Ref.: #18428]	Medium Name (multicellularity)	ISP 3

[Ref.: #18428]	Multicellular complex forming ability	no
[Ref.: #18428]	Medium Name (multicellularity)	ISP 4

[Ref.: #18428]	Multicellular complex forming ability	no
[Ref.: #18428]	Medium Name (multicellularity)	ISP 5

[Ref.: #18428]	Multicellular complex forming ability	no
[Ref.: #18428]	Medium Name (multicellularity)	ISP 6

[Ref.: #18428]	Multicellular complex forming ability	no
[Ref.: #18428]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3841]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #3841]

Culture medium growth

[Ref.: #3841]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3841]

Culture medium composition

expand / minimize

[Ref.: #18428]

Culture medium

ISP 2

[Ref.: #18428]

Culture medium growth

[Ref.: #18428]

Culture medium composition

expand / minimize

[Ref.: #18428]

Culture medium

ISP 3

[Ref.: #18428]

Culture medium growth

[Ref.: #18428]

Culture medium composition

expand / minimize

[Ref.: #18428]

Culture medium

ISP 4

[Ref.: #18428]

Culture medium growth

[Ref.: #18428]

Culture medium composition

expand / minimize

[Ref.: #18428]

Culture medium

ISP 5

[Ref.: #18428]

Culture medium growth

[Ref.: #18428]

Culture medium composition

expand / minimize

[Ref.: #18428]

Culture medium

ISP 6

[Ref.: #18428]

Culture medium growth

[Ref.: #18428]

Culture medium composition

expand / minimize

[Ref.: #18428]

Culture medium

ISP 7

[Ref.: #18428]

Culture medium growth

[Ref.: #18428]

Culture medium composition

expand / minimize

[Ref.: #22921]

Culture medium

PYGV medium

[Ref.: #22921]

Culture medium growth

[Ref.: #40114]

Culture medium

MEDIUM 112 - for Janibacter

[Ref.: #40114]

Culture medium growth

[Ref.: #40114]

Culture medium composition

expand / minimize

[Ref.: #123799]

Culture medium

CIP Medium 112

[Ref.: #123799]

Culture medium growth

[Ref.: #123799]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #3841]	growth	28 °C
[Ref.: #18428]	optimum	28 °C
[Ref.: #40114]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123799]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.2

[Ref.: #3841]	Murein short key	A11.31
[Ref.: #3841]	Murein types	A4alpha L-Lys-D-Asp
[Ref.: #22922]	Murein short key	A11.31
[Ref.: #22922]	Murein types	A4alpha L-Lys-D-Asp

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22921]	acetamide ChEBI	-	growth
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #18428]	arabinose ChEBI	+
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #18428]	cellulose ChEBI	+
[Ref.: #22921]	cellulose ChEBI	+	growth
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18428]	fructose ChEBI	+
[Ref.: #22921]	fructose ChEBI	+	growth
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #22921]	galactose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #18428]	glucose ChEBI	+
[Ref.: #22921]	glucose ChEBI	-	fermentation
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	glycogen ChEBI	+	fermentation	* from API Coryne
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #22921]	maltose ChEBI	-	builds acid from
[Ref.: #22921]	maltose ChEBI	+	growth
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #18428]	mannitol ChEBI	+
[Ref.: #22921]	mannitol ChEBI	-	growth
[Ref.: #22921]	mannose ChEBI	+	growth
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #18428]	myo-inositol ChEBI	-
[Ref.: #22921]	myo-inositol ChEBI	-	growth
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123799]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #123799]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18428]	raffinose ChEBI	+
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #18428]	rhamnose ChEBI	+
[Ref.: #22921]	rhamnose ChEBI	-	growth
[Ref.: #22921]	ribitol ChEBI	-	growth
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #22921]	salicin ChEBI	+	growth
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22921]	sorbitol ChEBI	-	growth
[Ref.: #22921]	starch ChEBI	-	hydrolysis
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #18428]	sucrose ChEBI	+
[Ref.: #22921]	sucrose ChEBI	+	growth
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #22921]	trehalose ChEBI	+	growth
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22921]	tween 20 ChEBI	-	hydrolysis
[Ref.: #22921]	tween 80 ChEBI	-	hydrolysis
[Ref.: #22921]	urea ChEBI	-	hydrolysis
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #18428]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #22921]	acetoin ChEBI	no
[Ref.: #22921]	hydrogen sulfide ChEBI	no
[Ref.: #22921]	indole ChEBI	no
[Ref.: #123799]	indole ChEBI	no
[Ref.: #22921]	melanin ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #22921]		acetoin ChEBI	-
[Ref.: #22921]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #22921]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #22921]	arginine Dihydrolase	-	3.5.3.6
[Ref.: #22921]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #22921]	beta-glucosidase	+	3.2.1.21
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #22921]	catalase	+	1.11.1.6
[Ref.: #123799]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #22921]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #22921]	L-aspartate arylamidase	+	3.4.11.21
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #22921]	lipase (C 14)	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #22921]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #22921]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123799]	oxidase	+
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #22921]	urease	-	3.5.1.5
[Ref.: #123799]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123799]	11468	not determinedn.d.	+/-	-	-	+	+/-	+	-	-	+/-	+	+	+	+	-	+/-	-	-	+/-	-	+/-	+/-	+/-	+	+	+	+	+	+	+/-	+/-	+	+	-	+	+	+	+	-	+	+	+/-	+/-	-	-	+/-	-	+/-	-	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18428]	109	+	-	-	+	-	+	+	+	+	+	+	not determinedn.d.	+	-	+	-	+	+	+	+	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18428]	138	not determinedn.d.	+	+	+	-	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+
[Ref.: #123799]	11659	-	+	+	+	-	+	+	+	+	-	+	+	+	+	+	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3841]	Sample type/isolated from	hindgut of termite Mastotermes darwiniensis
[Ref.: #3841]	Host species	Mastotermes darwiniensis
[Ref.: #3841]	Country	Germany
[Ref.: #3841]	Country ISO 3 Code	DEU
[Ref.: #3841]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hindgut contents of Australian termite Mastotermes darwiniensis
[Ref.: #67770]	Host species	Mastotermes darwiniensis
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe

[Ref.: #123799]	Sample type/isolated from	Hindgut of termite, Mastotermes darwiniensis
[Ref.: #123799]	Country	Germany
[Ref.: #123799]	Country ISO 3 Code	DEU
[Ref.: #123799]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ298873 (>99% sequence identity) for Isoptericola from Microbeatlas

Aquatic Samples	100
Soil Samples	472
Animal Samples	365
Plant Samples	124
Total Samples	1061

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18428]	Biosafety level	1	German classification
[Ref.: #3841]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123799]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3841]	Cellulomonas variformis 16S rRNA gene, strain MX5	AJ298873	1472	GenBank ENA	139208 tax ID
[Ref.: #124043]	Isoptericola variabilis gene for 16S rRNA, partial sequence, strain: NBRC 104115.	AB489221	1477	GenBank ENA	139208 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Isoptericola variabilis JCM 11754	GCA_001313765	contig	GenBank ENA	1305623 tax ID	*
[Ref.: #66792]	Isoptericola variabilis JCM 11754	1305623.3	wgs	PATRIC	1305623 tax ID	*
[Ref.: #66792]	Isoptericola variabilis JCM 11754	2734481962	draft	JGI IMG/M	1305623 tax ID	*

[Ref.: #3841]	GC-content	70 mol%
[Ref.: #67770]	GC-content	70-72 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Isoptericola variabilis JCM 11754 PATRIC: 1305623.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	84.817	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	91.39	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	85.569	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	52.828	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.033	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	92.167	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Isoptericola variabilis JCM 11754 NCBI: GCA_001313765
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	61.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	83.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.2

Availability in culture collections External links

[Ref.: #3841]

Culture collection no.

DSM 10177, ATCC BAA-303, CIP 109082, JCM 11754, KCTC 9985, NBRC 104115

[Ref.: #81797]

SI-ID 100586

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactococcus protaetiae sp. nov. and Xylanimonas protaetiae sp. nov., isolated from gut of larvae of Protaetia brevitarsis seulensis.	Heo J, Kim SJ, Kim MA, Tamura T, Saitou S, Hamada M, Kim JS, Hong SB, Kwon SW	Antonie Van Leeuwenhoek	10.1007/s10482-020-01413-6	2020	*
Phylogeny	Isoptericola cucumis sp. nov., isolated from the root tissue of cucumber (Cucumis sativus).	Kampfer P, Glaeser SP, Kloepper JW, Hu CH, McInroy JA, Martin K, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001055	2016	*
Phylogeny	Isoptericola halotolerans sp. nov., a novel actinobacterium isolated from saline soil from Qinghai Province, north-west China.	Zhang YQ, Schumann P, Li WJ, Chen GZ, Tian XP, Stackebrandt E, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.63641-0	2005	*
Phylogeny	Reclassification of Cellulosimicrobium variabile Bakalidou et al. 2002 as Isoptericola variabilis gen. nov., comb. nov.	Stackebrandt E, Schumann P, Cui XL	Int J Syst Evol Microbiol	10.1099/ijs.0.02878-0	2004	*

References

#3841

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10177

#18428

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22921

Yu-Qin Zhang, Peter Schumann, Wen-Jun Li, Guo-Zhong Chen, Xin-Peng Tian, Erko Stackebrandt, Li-Hua Xu, Cheng-Lin Jiang: Isoptericola halotolerans sp. nov., a novel actinobacterium isolated from saline soil from Qinghai Province, north-west China. IJSEM 55: 1867 - 1870 2005 ( DOI 10.1099/ijs.0.63641-0 , PubMed 16166680 )

#22922

Erko Stackebrandt, Peter Schumann, Xiao-Long Cui: Reclassification of Cellulosimicrobium variabile Bakalidou et al. 2002 as Isoptericola variabilis gen. nov., comb. nov.. IJSEM 54: 685 - 688 2004 ( DOI 10.1099/ijs.0.02878-0 , PubMed 15143008 )

#40114 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81797

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100586.1 )

#123799 Collection of Institut Pasteur ; Curators of the CIP; CIP 109082

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Isoptericola variabilis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Isoptericola variabilis JCM 11754

Isoptericola variabilis JCM 11754

Change proposal

Change proposal