Name: Cellulosimicrobium terreum DS-61
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12582

Type strain:

Species: Cellulosimicrobium terreum

Strain Designation: DS-61

Culture col. no.: DSM 18665, KCTC 19206, JCM 15619, NBRC 106259

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 412439 (species)

Section

Cellulosimicrobium terreum DS-61 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Cellulosimicrobium*
	Species	**Cellulosimicrobium terreum**
	Full Scientific Name (PNU)	Cellulosimicrobium terreum Yoon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32055]	Gram stain	positive
[Ref.: #32055]	Cell length	1.2 µm
[Ref.: #32055]	Cell width	0.6 µm
[Ref.: #32055]	Cell shape	coccus-shaped
[Ref.: #32055]	Motility	no

[Ref.: #67771]	Gram stain	positive

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.992

[Ref.: #32055]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7646]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7646]

Culture medium growth

[Ref.: #7646]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7646]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7646]	growth	28 °C
[Ref.: #32055]	growth	04-34 °C
[Ref.: #32055]	optimum	25 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #7646]	Temperature range	mesophilic
[Ref.: #32055]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32055]			optimum	7
[Ref.: #32055]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32055]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32055]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %97.053

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32055]		NaCl		growth	0-9	%
[Ref.: #32055]		NaCl		optimum	1	%

[Ref.: #7646]	Murein short key	A11.45
[Ref.: #7646]	Murein types	A4alpha L-Lys-L-Thr-D-Asp

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32055]	acetate ChEBI	+	carbon source
[Ref.: #32055]	arabinose ChEBI	+	carbon source
[Ref.: #32055]	cellobiose ChEBI	+	carbon source
[Ref.: #32055]	esculin ChEBI	+	hydrolysis
[Ref.: #32055]	fructose ChEBI	+	carbon source
[Ref.: #32055]	galactose ChEBI	+	carbon source
[Ref.: #32055]	glucose ChEBI	+	carbon source
[Ref.: #32055]	glutamate ChEBI	+	carbon source
[Ref.: #32055]	maltose ChEBI	+	carbon source
[Ref.: #32055]	mannose ChEBI	+	carbon source
[Ref.: #32055]	nitrate ChEBI	+	reduction
[Ref.: #32055]	pyruvate ChEBI	+	carbon source
[Ref.: #32055]	salicin ChEBI	+	carbon source
[Ref.: #32055]	sucrose ChEBI	+	carbon source
[Ref.: #32055]	trehalose ChEBI	+	carbon source
[Ref.: #32055]	tween 20 ChEBI	+	carbon source
[Ref.: #32055]	tween 40 ChEBI	+	carbon source
[Ref.: #32055]	tween 60 ChEBI	+	carbon source
[Ref.: #32055]	tween 80 ChEBI	+	carbon source
[Ref.: #32055]	urea ChEBI	+	carbon source
[Ref.: #32055]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32055]	acid phosphatase	+	3.1.3.2
[Ref.: #32055]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32055]	catalase	+	1.11.1.6
[Ref.: #32055]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7646]	Sample type/isolated from	soil
[Ref.: #7646]	Geographic location (country and/or sea, region)	Dokdo
[Ref.: #7646]	Country	Republic of Korea
[Ref.: #7646]	Country ISO 3 Code	KOR
[Ref.: #7646]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Dokdo
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7646]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7646]	Cellulosimicrobium terreum strain DS-61 16S ribosomal RNA gene, partial sequence	EF076760	1478	ENA	412439 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cellulosimicrobium terreum JCM 15619	GCA_004114655	contig	GenBank	412439 tax ID
[Ref.: #66792]	Cellulosimicrobium terreum KCTC 19206	GCA_014803435	scaffold	GenBank	412439 tax ID	*
[Ref.: #66792]	Cellulosimicrobium terreum strain JCM 15619	412439.4	wgs	PATRIC	412439 tax ID	*
[Ref.: #66792]	Cellulosimicrobium terreum strain KCTC 19206	412439.6	wgs	PATRIC	412439 tax ID	*

[Ref.: #7646]	GC-content	72.9 mol%
[Ref.: #67770]	GC-content	72.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cellulosimicrobium terreum KCTC 19206 NCBI: GCA_014803435.1
[Ref.: #69480]	spore-forming	no	97.053	no
[Ref.: #69480]	anaerobic	no	99.877	no
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	thermophile	no	99.884	no
[Ref.: #69480]	motile	no	91.992	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cellulosimicrobium terreum KCTC 19206 NCBI: GCA_014803435.1
[Ref.: #69481]	spore-forming	no	99	no

Availability in culture collections External links

[Ref.: #7646]

Culture collection no.

DSM 18665, KCTC 19206, JCM 15619, NBRC 106259

[Ref.: #20218]

Associated Passport(s) in StrainInfo

756760, 756761

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cellulosimicrobium protaetiae sp. nov., isolated from the gut of the larva of Protaetia brevitarsis seulensis.	Le Han H, Nguyen TTH, Li Z, Shin NR, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.005296	2022	*
Phylogeny	Cellulosimicrobium arenosum sp. nov., Isolated from Marine Sediment Sand.	Oh M, Kim JH, Yoon JH, Schumann P, Kim W	Curr Microbiol	10.1007/s00284-018-1464-6	2018	*
Phylogeny	Cellulosimicrobium aquatile sp. nov., isolated from Panagal reservoir, Nalgonda, India.	Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VR	Antonie Van Leeuwenhoek	10.1007/s10482-015-0588-y	2015	*
Phylogeny	Cellulosimicrobium terreum sp. nov., isolated from soil.	Yoon JH, Kang SJ, Schumann P, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.64889-0	2007	*

References

#7646

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18665

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32055

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28304 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28304

IJSEM 2493 2007 ( DOI 10.1099/ijs.0.64889-0 , PubMed 17978207 )

* These data were automatically processed and therefore are not curated

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Cellulosimicrobium terreum KCTC 19206

Cellulosimicrobium terreum KCTC 19206

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