Cellulosimicrobium terreum (DSM 18665, KCTC 19206, DS-61)

Name: Cellulosimicrobium terreum (DSM 18665, KCTC 19206, DS-61)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12582

Type strain

Strain Designation DS-61

Culture col. no. DSM 18665 KCTC 19206 DS-61 JCM 15619 NBRC 106259

NCBI tax ID(s) 412439

Special Collections DSMZ JCM KCTC Literature strains

History <- Jung-Hoon Yoon, DS-61 KCTC 19206 <-- J.-H. Yoon DS-61. <- JH Yoon, KRIBB

Links

Cellulosimicrobium terreum DS-61 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from soil.

Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399003

KCTC 19206,JCM 15619,DSM 18665

@ref 20215

Last LPSN update 2026-02-09 11:20:52

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Promicromonosporaceae

Genus Cellulosimicrobium

Species Cellulosimicrobium terreum

Full scientific name Cellulosimicrobium terreum Yoon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32055	positive	1.2 µm	0.6 µm	coccus-shaped
67771	positive
125439	positive				99.9
125438					92.5
125438	positive				92.913

Pigmentation

32055

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7646	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7646	positive	growth	28
32055	positive	growth	04-34
32055	positive	optimum	25
67770	positive	growth	28
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
32055	positive	optimum	7
32055	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32055	aerobe
67771	aerobe
125439	aerobe	97.5

Spore formation

32055

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32055	NaCl	positive	growth	0-9 %
32055	NaCl	positive	optimum	1 %

Murein

@ref	Murein short key	Type
7646	A11.45	A4alpha L-Lys-L-Thr-D-Asp

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32055	30089 ChEBI	acetate	+	carbon source
32055	22599 ChEBI	arabinose	+	carbon source
32055	17057 ChEBI	cellobiose	+	carbon source
32055	4853 ChEBI	esculin	+	hydrolysis
32055	28757 ChEBI	fructose	+	carbon source
32055	28260 ChEBI	galactose	+	carbon source
32055	17234 ChEBI	glucose	+	carbon source
32055	29987 ChEBI	glutamate	+	carbon source
32055	17306 ChEBI	maltose	+	carbon source
32055	37684 ChEBI	mannose	+	carbon source
32055	17632 ChEBI	nitrate	+	reduction
32055	15361 ChEBI	pyruvate	+	carbon source
32055	17814 ChEBI	salicin	+	carbon source
32055	17992 ChEBI	sucrose	+	carbon source
32055	27082 ChEBI	trehalose	+	carbon source
32055	53424 ChEBI	tween 20	+	carbon source
32055	53423 ChEBI	tween 40	+	carbon source
32055	53425 ChEBI	tween 60	+	carbon source
32055	53426 ChEBI	tween 80	+	carbon source
32055	16199 ChEBI	urea	+	carbon source
32055	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32055	acid phosphatase	+	3.1.3.2
32055	alkaline phosphatase	+	3.1.3.1
32055	catalase	+	1.11.1.6
32055	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7646	soil	Dokdo	Republic of Korea	KOR	Asia
67770	Soil
67771	From soil	Dokdo	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7646	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1480343v1 assembly for Cellulosimicrobium terreum KCTC 19206	scaffold	GCA_014803435	412439.6	8112249628	412439	51.01
67770	ASM411465v2 assembly for Cellulosimicrobium terreum JCM 15619	contig	GCA_004114655	412439.4	8112018916	412439	49.18

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7646	Cellulosimicrobium terreum strain DS-61 16S ribosomal RNA gene, partial sequence	EF076760	1478		412439

GC content

@ref	GC-content (mol%)	Method
7646	72.9
67770	72.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cellulosimicrobium terreum KCTC 19206
NCBI: GCA_014803435

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	69.70	no
125439	motility	BacteriaNetⓘ	no	84.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulosimicrobium terreum KCTC 19206
NCBI: GCA_014803435.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.91	no
125438	anaerobic	anaerobicⓘ	no	97.44	yes
125438	aerobic	aerobicⓘ	yes	81.99	yes
125438	spore-forming	spore-formingⓘ	no	64.08	yes
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	92.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cellulosimicrobium funkei: first report of infection in a nonimmunocompromised patient and useful phenotypic tests for differentiation from Cellulosimicrobium cellulans and Cellulosimicrobium terreum.	Petkar H, Li A, Bunce N, Duffy K, Malnick H, Shah JJ.	J Clin Microbiol	10.1128/jcm.01103-10	2011
Phylogeny	Cellulosimicrobium protaetiae sp. nov., isolated from the gut of the larva of Protaetia brevitarsis seulensis.	Le Han H, Nguyen TTH, Li Z, Shin NR, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.005296	2022
Phylogeny	Cellulosimicrobium arenosum sp. nov., Isolated from Marine Sediment Sand.	Oh M, Kim JH, Yoon JH, Schumann P, Kim W	Curr Microbiol	10.1007/s00284-018-1464-6	2018
Phylogeny	Cellulosimicrobium aquatile sp. nov., isolated from Panagal reservoir, Nalgonda, India.	Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VR	Antonie Van Leeuwenhoek	10.1007/s10482-015-0588-y	2015
Phylogeny	Cellulosimicrobium terreum sp. nov., isolated from soil.	Yoon JH, Kang SJ, Schumann P, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.64889-0	2007

References

#7646	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18665
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28304	IJSEM 2493 2007 ( DOI 10.1099/ijs.0.64889-0 , PubMed 17978207 )
#32055	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28304
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cellulosimicrobium terreum (DSM 18665, KCTC 19206, DS-61)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014803435

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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