Name: Mesobacillus selenatarsenatis SF-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1255

Type strain:

Species: Mesobacillus selenatarsenatis

Strain Designation: SF-1

Culture col. no.: DSM 18680, JCM 14380, FERM P-15431

Strain history: M. Ike SF-1.

NCBI tax ID(s): 388741 (species)

SI-ID 308605

DSM 18680, JCM 14380

Special Collections

Section

Mesobacillus selenatarsenatis SF-1 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from effluent drain in a glass-manufacturing plant.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Mesobacillus*
	Species	**Mesobacillus selenatarsenatis**
	Full Scientific Name (LPSN)	Mesobacillus selenatarsenatis (Yamamura et al. 2007) Patel and Gupta 2020

Synonym

Bacillus selenatarsenatis

Information on morphological and physiological properties Morphology

[Ref.: #31929]	Gram stain	positive

[Ref.: #31929]	Cell length	4.5 µm

[Ref.: #31929]	Cell width	1 µm

[Ref.: #31929]	Cell shape	rod-shaped

[Ref.: #31929]	Motility	yes

[Ref.: #31929]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7657]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #7657]

Culture medium growth

[Ref.: #7657]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7657]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7657]	growth	40 °C
[Ref.: #31929]	growth	25-40 °C
[Ref.: #31929]	optimum	32.5 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31929]			optimum	8.25
[Ref.: #31929]			growth	7.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31929]

Oxygen tolerance

facultative anaerobe

[Ref.: #31929]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.748

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31929]		NaCl		growth	02-05	%
[Ref.: #31929]		NaCl		optimum	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31929]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31929]	cellobiose ChEBI	+	carbon source
[Ref.: #31929]	esculin ChEBI	+	hydrolysis
[Ref.: #31929]	fructose ChEBI	+	carbon source
[Ref.: #31929]	gelatin ChEBI	+	carbon source
[Ref.: #31929]	glucose ChEBI	+	carbon source
[Ref.: #31929]	glycogen ChEBI	+	carbon source
[Ref.: #31929]	maltose ChEBI	+	carbon source
[Ref.: #31929]	nitrate ChEBI	+	reduction
[Ref.: #31929]	salicin ChEBI	+	carbon source
[Ref.: #31929]	sucrose ChEBI	+	carbon source
[Ref.: #31929]	trehalose ChEBI	+	carbon source
[Ref.: #31929]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31929]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31929]		catalase	+	1.11.1.6
[Ref.: #31929]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7657]	Sample type/isolated from	effluent drain in a glass-manufacturing plant
[Ref.: #7657]	Geographic location (country and/or sea, region)	Osaka
[Ref.: #7657]	Country	Japan
[Ref.: #7657]	Country ISO 3 Code	JPN
[Ref.: #7657]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Selenium-contaminated sediment obtained from an effluent drain of a glass-manufacturing plant
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Industrial wastewater
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB262082 (>99% sequence identity) for Mesobacillus from Microbeatlas

Aquatic Samples	793
Soil Samples	1008
Animal Samples	580
Plant Samples	118
Total Samples	2499

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7657]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7657]	Bacillus selenatarsenatis gene for 16S rRNA, partial sequence	AB262082	1413	GenBank ENA	1321606 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mesobacillus selenatarsenatis SF-1	GCA_000813125	contig	GenBank ENA	1321606 tax ID

[Ref.: #7657]	GC-content	42.8 mol%
[Ref.: #67770]	GC-content	42.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mesobacillus selenatarsenatis SF-1 SF-1 NCBI: GCA_000813125.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	79.147	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.807	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	61.648	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.748	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.945	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.667	no

Availability in culture collections External links

[Ref.: #7657]

Culture collection no.

DSM 18680, JCM 14380, FERM P-15431

[Ref.: #70911]

SI-ID 308605

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesobacillus aurantius sp. nov., isolated from an orange-colored pond near a solar saltern.	Rai A, Smita N, Shabbir A, Jagadeeshwari U, Keertana T, Sasikala C, Ramana CV	Arch Microbiol	10.1007/s00203-020-02146-w	2021	*
Genetics	Draft Genome Sequence of Bacillus selenatarsenatis SF-1T, a Promising Agent for Bioremediation of Environments Contaminated with Selenium and Arsenic.	Kuroda M, Ayano H, Sei K, Yamashita M, Ike M	Genome Announc	10.1128/genomeA.01466-14	2015	*
Enzymology	Molecular cloning and characterization of the srdBCA operon, encoding the respiratory selenate reductase complex, from the selenate-reducing bacterium Bacillus selenatarsenatis SF-1.	Kuroda M, Yamashita M, Miwa E, Imao K, Fujimoto N, Ono H, Nagano K, Sei K, Ike M	J Bacteriol	10.1128/JB.01197-10	2011	*
Phylogeny	Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility.	Newcombe D, Dekas A, Mayilraj S, Venkateswaran K	Int J Syst Evol Microbiol	10.1099/ijs.0.009167-0	2009	*
Metabolism	Removal of arsenic from contaminated soils by microbial reduction of arsenate and quinone.	Yamamura S, Watanabe M, Kanzaki M, Soda S, Ike M	Environ Sci Technol	10.1021/es703146f	2008	*
Phylogeny	Bacillus selenatarsenatis sp. nov., a selenate- and arsenate-reducing bacterium isolated from the effluent drain of a glass-manufacturing plant.	Yamamura S, Yamashita M, Fujimoto N, Kuroda M, Kashiwa M, Sei K, Fujita M, Ike M	Int J Syst Evol Microbiol	10.1099/ijs.0.64667-0	2007	*

References

#7657

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18680

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31929

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28186 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70911

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID308605.1 )

#28186

IJSEM 1060 2007 ( DOI 10.1099/ijs.0.64667-0 , PubMed 17473259 )

* These data were automatically processed and therefore are not curated

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Mesobacillus selenatarsenatis SF-1 SF-1

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