Strain identifier
BacDive ID: 1255
Type strain: 
Species: Mesobacillus selenatarsenatis
Strain Designation: SF-1
Strain history: M. Ike SF-1.
NCBI tax ID(s): 388741 (species)
version 9.1 (current version)
General
@ref: 7657
BacDive-ID: 1255
DSM-Number: 18680
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, Gram-positive, motile, rod-shaped
description: Mesobacillus selenatarsenatis SF-1 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from effluent drain in a glass-manufacturing plant.
NCBI tax id
- NCBI tax id: 388741
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7657 | <- M. Ike; SF-1 |
| 67770 | M. Ike SF-1. |
doi: 10.13145/bacdive1255.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Mesobacillus
- species: Mesobacillus selenatarsenatis
- full scientific name: Mesobacillus selenatarsenatis (Yamamura et al. 2007) Patel and Gupta 2020
synonyms
- @ref: 20215
- synonym: Bacillus selenatarsenatis
@ref: 7657
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Mesobacillus
species: Mesobacillus selenatarsenatis
full scientific name: Mesobacillus selenatarsenatis (Yamamura et al. 2007) Patel and Gupta 2020
strain designation: SF-1
type strain: yes
Morphology
cell morphology
- @ref: 31929
- gram stain: positive
- cell length: 4.5 µm
- cell width: 1 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 31929
- production: no
Culture and growth conditions
culture medium
- @ref: 7657
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 7657 | positive | growth | 40 |
| 31929 | positive | growth | 25-40 |
| 31929 | positive | optimum | 32.5 |
| 67770 | positive | growth | 30 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31929 | positive | growth | 7.5-9 | alkaliphile |
| 31929 | positive | optimum | 8.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 31929
- oxygen tolerance: facultative anaerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 31929 | yes | |
| 69480 | yes | 92.748 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31929 | NaCl | positive | growth | 02-05 % |
| 31929 | NaCl | positive | optimum | 3.5 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31929 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
| 31929 | 17057 | cellobiose | + | carbon source |
| 31929 | 28757 | fructose | + | carbon source |
| 31929 | 5291 | gelatin | + | carbon source |
| 31929 | 17234 | glucose | + | carbon source |
| 31929 | 28087 | glycogen | + | carbon source |
| 31929 | 17306 | maltose | + | carbon source |
| 31929 | 17814 | salicin | + | carbon source |
| 31929 | 17992 | sucrose | + | carbon source |
| 31929 | 27082 | trehalose | + | carbon source |
| 31929 | 18222 | xylose | + | carbon source |
| 31929 | 4853 | esculin | + | hydrolysis |
| 31929 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 31929
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31929 | catalase | + | 1.11.1.6 |
| 31929 | gelatinase | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7657 | effluent drain in a glass-manufacturing plant | Osaka | Japan | JPN | Asia |
| 67770 | Selenium-contaminated sediment obtained from an effluent drain of a glass-manufacturing plant | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Plant (Factory) |
| #Engineered | #Waste | #Industrial wastewater |
| #Engineered | #Waste | #Wastewater |
taxonmaps
- @ref: 69479
- File name: preview.99_2877.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_292;97_834;98_2226;99_2877&stattab=map
- Last taxonomy: Mesobacillus
- 16S sequence: AB262082
- Sequence Identity:
- Total samples: 2499
- soil counts: 1008
- aquatic counts: 793
- animal counts: 580
- plant counts: 118
Safety information
risk assessment
- @ref: 7657
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7657
- description: Bacillus selenatarsenatis gene for 16S rRNA, partial sequence
- accession: AB262082
- length: 1413
- database: nuccore
- NCBI tax ID: 1321606
Genome sequences
- @ref: 67770
- description: Mesobacillus selenatarsenatis SF-1
- accession: GCA_000813125
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1321606
GC content
| @ref | GC-content | method |
|---|---|---|
| 7657 | 42.8 | |
| 67770 | 42.8 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 79.147 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.807 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 61.648 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.748 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 91.945 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 82.667 | no |
External links
@ref: 7657
culture collection no.: DSM 18680, JCM 14380, FERM P-15431
straininfo link
- @ref: 70911
- straininfo: 308605
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17473259 | Bacillus selenatarsenatis sp. nov., a selenate- and arsenate-reducing bacterium isolated from the effluent drain of a glass-manufacturing plant. | Yamamura S, Yamashita M, Fujimoto N, Kuroda M, Kashiwa M, Sei K, Fujita M, Ike M | Int J Syst Evol Microbiol | 10.1099/ijs.0.64667-0 | 2007 | Aerobiosis, Arsenates/*metabolism, Bacillus/*classification/genetics/isolation & purification/*metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, *Industrial Waste, Japan, Molecular Sequence Data, Nitrates/metabolism, Nucleic Acid Hybridization, Oxidation-Reduction, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Selenic Acid, Selenium Compounds/*metabolism, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Water Microbiology | Metabolism |
| Metabolism | 18767680 | Removal of arsenic from contaminated soils by microbial reduction of arsenate and quinone. | Yamamura S, Watanabe M, Kanzaki M, Soda S, Ike M | Environ Sci Technol | 10.1021/es703146f | 2008 | Arsenates/*metabolism, Arsenic/*chemistry, Bacillus/*metabolism, Benzoquinones/*metabolism, Biodegradation, Environmental, Soil/*analysis, Soil Pollutants/metabolism | |
| Phylogeny | 19567559 | Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility. | Newcombe D, Dekas A, Mayilraj S, Venkateswaran K | Int J Syst Evol Microbiol | 10.1099/ijs.0.009167-0 | 2009 | Alkalies/*pharmacology, Anti-Bacterial Agents/*pharmacology, Bacillus/*classification/drug effects/genetics/*isolation & purification, Bacterial Typing Techniques, Carbohydrate Metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Spacecraft | Metabolism |
| Enzymology | 21357486 | Molecular cloning and characterization of the srdBCA operon, encoding the respiratory selenate reductase complex, from the selenate-reducing bacterium Bacillus selenatarsenatis SF-1. | Kuroda M, Yamashita M, Miwa E, Imao K, Fujimoto N, Ono H, Nagano K, Sei K, Ike M | J Bacteriol | 10.1128/JB.01197-10 | 2011 | Amino Acid Sequence, Bacillus/classification/*enzymology, Bacterial Proteins/genetics/*metabolism, Base Sequence, *Cloning, Molecular, Gene Expression Regulation, Bacterial/physiology, Gene Expression Regulation, Enzymologic/physiology, Mutation, Operon/*genetics, Oxidoreductases/genetics/*metabolism, Phylogeny, Protein Structure, Tertiary, Selenic Acid, Selenium Compounds/*metabolism | Phylogeny |
| Genetics | 25614571 | Draft Genome Sequence of Bacillus selenatarsenatis SF-1T, a Promising Agent for Bioremediation of Environments Contaminated with Selenium and Arsenic. | Kuroda M, Ayano H, Sei K, Yamashita M, Ike M | Genome Announc | 10.1128/genomeA.01466-14 | 2015 | ||
| Phylogeny | 33398397 | Mesobacillus aurantius sp. nov., isolated from an orange-colored pond near a solar saltern. | Rai A, Smita N, Shabbir A, Jagadeeshwari U, Keertana T, Sasikala C, Ramana CV | Arch Microbiol | 10.1007/s00203-020-02146-w | 2021 | Bacillaceae/chemistry/classification/isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, India, Phospholipids/analysis, *Phylogeny, *Ponds/microbiology, RNA, Ribosomal, 16S/genetics, Species Specificity | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7657 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18680) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18680 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 31929 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28186 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 70911 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID308605.1 | StrainInfo: A central database for resolving microbial strain identifiers |