Prevotella albensis (CIP 105472, DSM 11370, CCUG 51935)

Name: Prevotella albensis (CIP 105472, DSM 11370, CCUG 51935)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12535

Type strain

Strain Designation M384

Culture col. no. CIP 105472 DSM 11370 CCUG 51935 JCM 12258 M384

NCBI tax ID(s) 1122978 77768

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- G. Avgustin <- R.J. Wallace, M384 (Bacteroides ruminicola subsp. ruminicola) JCM <-- CIP 105472 <-- G. Avgustin M384 <-- R. J. Wallace M384. CIP <- 1998, G. Avgustin, Univ. Ljubljana, Slovenija: strain M384 <- R.J. Wallace, Rowett Res. Inst., Aberdeen, Scotland: strain M384, Bacteroides ruminicola subsp. ruminicola

Links

Prevotella albensis M384 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from sheep rumen.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49086

DSM 11370,JCM 12258,CIP 105472,CCUG 51935

@ref 20215

Last LPSN update 2026-05-29 08:27:49

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Prevotellaceae

Genus Prevotella

Species Prevotella albensis

Full scientific name Prevotella albensis Avguštin et al. 1997

Synonyms (1)

Segatella albensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116183	negative	rod-shaped
125438	negative		92.234
125439	negative		98.013

Colony morphology

@ref	Incubation period
4313	1-2 days
59373	>3 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4313	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
4313	TREPONEMA MEDIUM (DSMZ Medium 159)	Medium recipe at MediaDive	Name: TREPONEMA MEDIUM (DSMZ Medium 159) Composition: D-Glucose 2.0 g/l Na2CO3 1.5 g/l L-Cysteine HCl x H2O 1.0 g/l (NH4)2SO4 0.9 g/l NaCl 0.9 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l MgSO4 x 7 H2O 0.18 g/l CaCl2 x 2 H2O 0.12 g/l Sodium resazurin 0.0005 g/l Rumen fluid Distilled water
39299	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
116183	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4313	positive	growth	37
39299	positive	growth	37
59373	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4313	anaerobe
59373	anaerobe
125438	anaerobe	94.281

Spore formation

@ref	Spore formation	Confidence
125438		91.36
125439		99.465

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
116183	17632 ChEBI	nitrate	-	reduction
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
116183	16301 ChEBI	nitrite	-	reduction
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
116183	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	+	3.2.1.23	from API zym
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
116183	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116183	oxidase	-
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
116183	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116183	-	+	-	-	-	-	-	-	-	-	+	+	-	+	-	-	+	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
4313	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
4313	-	-	-	+	-	+/-	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
4313	-	-	-	+/-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	+/-	-	-	+/-	-	-	-	-	+/-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Organ	#Rumen

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4313	sheep rumen	Scotland	United Kingdom	GBR	Europe
59373	Rumen of cattle
67770	Rumen of cattle
116183	Animal, Sheep, rumen	Scotland	United Kingdom	GBR	Europe

Taxonmaps

69479

Global distribution of 16S sequence AB547669 (>99% sequence identity) for Prevotella albensis subclade from Microbeatlas

Aquatic Samples	61
Soil Samples	66
Animal Samples	8227
Plant Samples	123
Total Samples	8477

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4313	2	Risk group (German classification) According to TRBA 466
116183	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42656v1 assembly for Segatella albensis DSM 11370 = JCM 12258	scaffold	GCA_000426565	1122978.3	2526164514	1122978	69.62
67770	ASM61352v1 assembly for Segatella albensis DSM 11370 = JCM 12258	contig	GCA_000613525	1235821.3	2582581006	1122978	51.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4313	Prevotella albensis 16S rRNA gene, strain M384	AJ011683	1495		77768
67770	Prevotella albensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 12258	AB547669	1481		77768

GC content

@ref	GC-content (mol%)	Method
4313	41.2	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM42656v1 assembly for Segatella albensis DSM 11370 = JCM 12258
BV-BRC: 1122978.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	63.71	no
125439	gram_stain	BacteriaNetⓘ	negative	98.01	no
125439	motility	BacteriaNetⓘ	no	78.54	no
125439	spore_formation	BacteriaNetⓘ	no	99.47	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Prevotella albensis DSM 11370
PATRIC: 1122978.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	92.23	no
125438	anaerobic	anaerobicⓘ	yes	94.28	yes
125438	spore-forming	spore-formingⓘ	no	91.36	no
125438	aerobic	aerobicⓘ	no	97.25	no
125438	thermophilic	thermophileⓘ	no	94.71	yes
125438	flagellated	motile2+ⓘ	no	85.50	no

Literature

References

#4313	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11370
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39299	; Curators of the CIP;
#59373	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51935
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116183	Collection of Institut Pasteur ; Curators of the CIP; CIP 105472
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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