Name: Segatella albensis M384
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12535

Type strain:

Species: Segatella albensis

Strain Designation: M384

Culture col. no.: CIP 105472, DSM 11370, CCUG 51935, JCM 12258

Strain history: CIP <- 1998, G. Avgustin, Univ. Ljubljana, Slovenija: strain M384 <- R.J. Wallace, Rowett Res. Inst., Aberdeen, Scotland: strain M384, Bacteroides ruminicola subsp. ruminicola

NCBI tax ID(s): 1122978 (strain), 77768 (species)

SI-ID 49086

DSM 11370, JCM 12258, CIP 105472, CCUG 51935

Section

Segatella albensis M384 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sheep rumen.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Segatella*
	Species	**Segatella albensis**
	Full Scientific Name (LPSN)	Segatella albensis (Avguštin et al. 1997) Hitch et al. 2023

Synonym

Prevotella albensis

Information on morphological and physiological properties Morphology

[Ref.: #116183]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #116183]	Cell shape	rod-shaped

[Ref.: #116183]	Motility	no

[Ref.: #4313]	Incubation period	1-2 days

[Ref.: #59373]	Incubation period	>3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4313]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #4313]

Culture medium growth

[Ref.: #4313]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4313]

Culture medium composition

expand / minimize

[Ref.: #4313]

Culture medium

TREPONEMA MEDIUM (DSMZ Medium 159)

[Ref.: #4313]

Culture medium growth

[Ref.: #4313]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #39299]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #39299]

Culture medium growth

[Ref.: #39299]

Culture medium composition

expand / minimize

[Ref.: #116183]

Culture medium

CIP Medium 20

[Ref.: #116183]

Culture medium growth

[Ref.: #116183]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #4313]	growth	37 °C
[Ref.: #39299]	growth	37 °C
[Ref.: #59373]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #4313]	Temperature range	mesophilic
[Ref.: #39299]	Temperature range	mesophilic
[Ref.: #59373]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4313]	Oxygen tolerance	anaerobe
[Ref.: #59373]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #116183]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #116183]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #116183]		indole ChEBI	no
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A, API zym
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A, API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A, API zym
[Ref.: #116183]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A, API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116183]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #116183]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #4313]	13052	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #4313]	12161	-	-	-	+	-	+/-	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #4313]	12160	-	-	-	+/-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	+/-	-	-	+/-	-	-	-	-	+/-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116183]	8728	-	+	-	-	-	-	-	-	-	-	+	+	-	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4313]	Sample type/isolated from	sheep rumen
[Ref.: #4313]	Geographic location (country and/or sea, region)	Scotland
[Ref.: #4313]	Country	United Kingdom
[Ref.: #4313]	Country ISO 3 Code	GBR
[Ref.: #4313]	Continent	Europe

[Ref.: #59373]	Sample type/isolated from	Rumen of cattle

[Ref.: #67770]	Sample type/isolated from	Rumen of cattle

[Ref.: #116183]	Sample type/isolated from	Animal, Sheep, rumen
[Ref.: #116183]	Geographic location (country and/or sea, region)	Scotland
[Ref.: #116183]	Country	United Kingdom
[Ref.: #116183]	Country ISO 3 Code	GBR
[Ref.: #116183]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB547669 (>99% sequence identity) for Prevotella albensis subclade from Microbeatlas

Aquatic Samples	61
Soil Samples	66
Animal Samples	8227
Plant Samples	123
Total Samples	8477

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4313]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116183]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella albensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 12258	AB547669	1481	ENA	77768 tax ID
[Ref.: #4313]	Prevotella albensis 16S rRNA gene, strain M384	AJ011683	1495	ENA	77768 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella albensis DSM 11370 = JCM 12258	GCA_000426565	scaffold	GenBank	1122978 tax ID
[Ref.: #67770]	Prevotella albensis DSM 11370 = JCM 12258	GCA_000613525	contig	GenBank	1122978 tax ID
[Ref.: #66792]	Prevotella albensis DSM 11370	1122978.3	wgs	PATRIC	1122978 tax ID	*
[Ref.: #66792]	Prevotella albensis JCM 12258	1235821.3	wgs	PATRIC	1122978 tax ID	*
[Ref.: #66792]	Prevotella albensis JCM 12258	2582581006	draft	JGI IMG/M	1122978 tax ID	*
[Ref.: #66792]	Prevotella albensis DSM 11370	2526164514	draft	JGI IMG/M	1122978 tax ID	*

[Ref.: #4313]

GC-content

41.2 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella albensis DSM 11370 = JCM 12258 DSM 11370 NCBI: GCA_000426565.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella albensis DSM 11370 PATRIC: 1122978.3
[Ref.: #69480]	motile	no	91.864	no
[Ref.: #69480]	flagellated	no	96.496	no
[Ref.: #69480]	gram-positive	no	97.686	no
[Ref.: #69480]	anaerobic	yes	99.664	no
[Ref.: #69480]	aerobic	no	98.784	yes
[Ref.: #69480]	halophile	no	85.979	no
[Ref.: #69480]	spore-forming	no	96.071	no
[Ref.: #69480]	thermophile	no	94.149	yes
[Ref.: #69480]	glucose-util	yes	82.289	no
[Ref.: #69480]	glucose-ferment	yes	70.683	no

Availability in culture collections External links

[Ref.: #4313]

Culture collection no.

CIP 105472, DSM 11370, CCUG 51935, JCM 12258

[Ref.: #81752]

SI-ID 49086

References

#4313

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11370

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39299 ; Curators of the CIP;
#59373 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51935

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81752

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49086.1 )

#116183 Collection of Institut Pasteur ; Curators of the CIP; CIP 105472
* These data were automatically processed and therefore are not curated

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Prevotella albensis DSM 11370 = JCM 12258 DSM 11370

Prevotella albensis DSM 11370

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