Name: Parabacteroides goldsteinii DSM 19448
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12500

Type strain:

Species: Parabacteroides goldsteinii

Culture col. no.: DSM 19448, ATCC BAA-1180, CCUG 48944, JCM 13446, KCTC 15612, WAL 12034

Strain history: <- DSM <- JCM <- CCUG <- Y Song, WAL 12034

NCBI tax ID(s): 927665 (strain), 328812 (species)

SI-ID 290961

CCUG 48944, JCM 13446, ATCC BAA-1180, DSM 19448

Special Collections

Other strains from Parabacteroides goldsteinii

Section

Parabacteroides goldsteinii DSM 19448 is an anaerobe, rod-shaped bacterium that was isolated from human tissue.

rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Tannerellaceae*
	Genus	*Parabacteroides*
	Species	**Parabacteroides goldsteinii**
	Full Scientific Name (LPSN)	Parabacteroides goldsteinii (Song et al. 2006) Sakamoto and Benno 2006

Synonym

Bacteroides goldsteinii

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #58398]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8022]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8022]

Culture medium growth

[Ref.: #8022]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8022]

Culture medium composition

expand / minimize

[Ref.: #8022]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)

[Ref.: #8022]

Culture medium growth

[Ref.: #8022]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8022]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8022]	growth	37 °C
[Ref.: #58398]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8022]	Oxygen tolerance	anaerobe
[Ref.: #58398]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.792

[Ref.: #67770]	Observation	quinones: MK-9, MK-10
[Ref.: #67771]	Observation	quinones: MK-9, MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68367]	cellobiose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68367]	D-xylose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	esculin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	glycerol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-rhamnose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68367]	raffinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68367]	salicin ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A, API rID32A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68367]		indole ChEBI	no	* from API 20A, API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A, API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68367]	beta-glucosidase	+	3.2.1.21	* from API 20A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
	Only first 10 entries are displayed. Click here to see all.

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #8022]	2237	-	-	+	-	+	+	+	-	+	-	-	+	-	-	+	+/-	+	-	+	+	+/-	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8022]	13089	-	-	+	+	-	+/-	+/-	-	-	+	+	+	+	-	-	-	+	+	-	+	+	+	-	+	+	+	+	+	+/-
[Ref.: #8022]	12275	-	-	+	+	-	+	+	-	-	+	+	+	-	-	-	-	+	+	-	+	+	+	-	+	+	+/-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8022]	Sample type/isolated from	human tissue
[Ref.: #8022]	Country	USA
[Ref.: #8022]	Country ISO 3 Code	USA
[Ref.: #8022]	Continent	North America

[Ref.: #58398]	Sample type/isolated from	Human abdominal fluid
[Ref.: #58398]	Sampling date	1984
[Ref.: #58398]	Geographic location (country and/or sea, region)	Los Angeles
[Ref.: #58398]	Country	USA
[Ref.: #58398]	Country ISO 3 Code	USA
[Ref.: #58398]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human clinical specimens of intestinal origin

[Ref.: #67771]	Sample type/isolated from	From human clinical specimens of intestinal origin(human tissue)
[Ref.: #67771]	Country	USA
[Ref.: #67771]	Country ISO 3 Code	USA
[Ref.: #67771]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Other	-
#Infection	#Patient	#Specimen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY974070 (>99% sequence identity) for Parabacteroides goldsteinii subclade from Microbeatlas

Aquatic Samples	3273
Soil Samples	1445
Animal Samples	136228
Plant Samples	557
Total Samples	141503

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8022]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Parabacteroides goldsteinii strain WAL 12034 16S ribosomal RNA gene, partial sequence	AY974070	1396	GenBank ENA	328812 tax ID
[Ref.: #8022]	Parabacteroides goldsteinii strain JCM13446 16S ribosomal RNA gene, partial sequence	EU136697	2002	GenBank ENA	927665 tax ID
[Ref.: #20218]	Parabacteroides goldsteinii gene for 16S ribosomal RNA, partial sequence, strain: JCM 13446	AB547650	1476	GenBank ENA	927665 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Parabacteroides goldsteinii DSM 19448 = WAL 12034	GCA_000969835	scaffold	GenBank ENA	927665 tax ID
[Ref.: #67770]	Parabacteroides goldsteinii DSM 19448 = WAL 12034 NCTC11032	GCA_900624735	contig	GenBank ENA	927665 tax ID
[Ref.: #66792]	Parabacteroides goldsteinii DSM 19448 = WAL 12034 Parabacteroides goldsteinii 82E8	GCA_900624825	contig	GenBank ENA	927665 tax ID	*
[Ref.: #66792]	Parabacteroides goldsteinii DSM 19448 = WAL 12034	927665.4	wgs	PATRIC	927665 tax ID	*
[Ref.: #66792]	Parabacteroides goldsteinii DSM 19448 = WAL 12034 strain Parabacteroides goldsteinii 81H9	927665.27	wgs	PATRIC	927665 tax ID	*
[Ref.: #66792]	Parabacteroides goldsteinii DSM 19448 = WAL 12034 strain Parabacteroides goldsteinii 82E8	927665.28	wgs	PATRIC	927665 tax ID	*

[Ref.: #8022]	GC-content	43 mol%
[Ref.: #67770]	GC-content	43 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	43.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parabacteroides goldsteinii DSM 19448 = WAL 12034 PATRIC: 927665.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	89.309	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	86.74	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.268	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.792	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.607	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.095	no

Availability in culture collections External links

[Ref.: #8022]

Culture collection no.

DSM 19448, ATCC BAA-1180, CCUG 48944, JCM 13446, KCTC 15612, WAL 12034

[Ref.: #81719]

SI-ID 290961

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parabacteroides chongii sp. nov., isolated from blood of a patient with peritonitis.	Kim H, Im WT, Kim M, Kim D, Seo YH, Yong D, Jeong SH, Lee K	J Microbiol	10.1007/s12275-018-8122-3	2018	*
Phylogeny	Parabacteroides gordonii sp. nov., isolated from human blood cultures.	Sakamoto M, Suzuki N, Matsunaga N, Koshihara K, Seki M, Komiya H, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.010611-0	2009	*
Phylogeny	Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov.	Sakamoto M, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64192-0	2006	*
Phylogeny	"Bacteroides goldsteinii sp. nov." isolated from clinical specimens of human intestinal origin.	Song Y, Liu C, Lee J, Bolanos M, Vaisanen ML, Finegold SM	J Clin Microbiol	10.1128/JCM.43.9.4522-4527.2005	2005	*

References

#8022

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19448

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#58398 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48944

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81719

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290961.1 )

* These data were automatically processed and therefore are not curated

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Parabacteroides goldsteinii DSM 19448 = WAL 12034

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