Name: Bhargavaea beijingensis ge10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12009

Type strain:

Species: Bhargavaea beijingensis

Strain Designation: ge10

Culture col. no.: DSM 19037, CGMCC 1.6762

Strain history: <- F. Qiu, College of Life Sci., Capital Normal Univ., Beijing, China; ge10

NCBI tax ID(s): 426756 (species)

SI-ID 362297

CGMCC 1.6762, DSM 19037

Special Collections

Section

Bhargavaea beijingensis ge10 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from ginseng roots, internal tissue.

coccus-shaped
Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Bhargavaea*
	Species	**Bhargavaea beijingensis**
	Full Scientific Name (LPSN)	Bhargavaea beijingensis (Qiu et al. 2009) Verma et al. 2012

Synonym

Bacillus beijingensis

Information on morphological and physiological properties Morphology

[Ref.: #32659]	Gram stain	positive

[Ref.: #32659]	Cell length	1.25 µm

[Ref.: #32659]	Cell width	0.65 µm

[Ref.: #32659]	Cell shape	coccus-shaped

[Ref.: #32659]	Motility	no

[Ref.: #32659]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7856]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #7856]

Culture medium growth

[Ref.: #7856]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7856]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7856]	growth	30 °C
[Ref.: #32659]	growth	07-45 °C
[Ref.: #32659]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #32659]			optimum	7.5
[Ref.: #32659]			growth	5.5-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32659]

Oxygen tolerance

aerobe

[Ref.: #32659]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32659]		NaCl		growth	<12	%

[Ref.: #7856]	Murein short key	A11.33
[Ref.: #7856]	Murein types	A4alpha L-Lys-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32659]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #32659]	acetate ChEBI	+	carbon source
[Ref.: #32659]	alanine ChEBI	+	carbon source
[Ref.: #32659]	arabinose ChEBI	+	carbon source
[Ref.: #32659]	dextrin ChEBI	+	carbon source
[Ref.: #32659]	esculin ChEBI	+	hydrolysis
[Ref.: #32659]	fructose ChEBI	+	carbon source
[Ref.: #32659]	gelatin ChEBI	+	carbon source
[Ref.: #32659]	glutamate ChEBI	+	carbon source
[Ref.: #32659]	glycerol ChEBI	+	carbon source
[Ref.: #32659]	glycogen ChEBI	+	carbon source
[Ref.: #32659]	inosine ChEBI	+	carbon source
[Ref.: #32659]	L-alaninamide ChEBI	+	carbon source
[Ref.: #32659]	L-arabitol ChEBI	+	carbon source
[Ref.: #32659]	malate ChEBI	+	carbon source
[Ref.: #32659]	maltose ChEBI	+	carbon source
[Ref.: #32659]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #32659]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32659]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32659]	nitrate ChEBI	+	reduction
[Ref.: #32659]	putrescine ChEBI	+	carbon source
[Ref.: #32659]	pyruvate ChEBI	+	carbon source
[Ref.: #32659]	serine ChEBI	+	carbon source
[Ref.: #32659]	succinate ChEBI	+	carbon source
[Ref.: #32659]	thymidine ChEBI	+	carbon source
[Ref.: #32659]	tween 40 ChEBI	+	carbon source
[Ref.: #32659]	uridine ChEBI	+	carbon source
[Ref.: #32659]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32659]		catalase	+	1.11.1.6
[Ref.: #32659]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7856]	Sample type/isolated from	ginseng roots, internal tissue
[Ref.: #7856]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #7856]	Country	China
[Ref.: #7856]	Country ISO 3 Code	CHN
[Ref.: #7856]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF371374 (>99% sequence identity) for Bhargavaea from Microbeatlas

Aquatic Samples	273
Soil Samples	871
Animal Samples	344
Plant Samples	219
Total Samples	1707

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7856]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7856]	Bacillus beijingensis strain ge10 16S ribosomal RNA gene, partial sequence	EF371374	1512	GenBank ENA	426756 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bhargavaea beijingensis CGMCC 1.6762	GCA_900101985	contig	GenBank ENA	426756 tax ID	*
[Ref.: #66792]	Bhargavaea beijingensis strain CGMCC 1.6762	426756.5	wgs	PATRIC	426756 tax ID	*
[Ref.: #66792]	Bhargavaea beijingensis CGMCC 1.6762	2619618820	draft	JGI IMG/M	426756 tax ID	*

[Ref.: #7856]	GC-content	53.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #7856]	GC-content	49.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32659]	GC-content	49.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bhargavaea beijingensis strain CGMCC 1.6762 PATRIC: 426756.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bhargavaea beijingensis strain CGMCC 1.6762 PATRIC: 426756.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.828	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.369	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	58.983	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.602	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.485	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	71.906	yes

Availability in culture collections External links

[Ref.: #7856]

Culture collection no.

DSM 19037, CGMCC 1.6762

[Ref.: #81228]

SI-ID 362297

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bhargavaea ullalensis sp. nov., isolated from coastal sand.	Glaeser SP, Arun AB, Rekha PD, Prabhu S, Busse HJ, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.045062-0	2012	*
Phylogeny	Reclassification of Bacillus beijingensis Qiu et al. 2009 and Bacillus ginsengi Qiu et al. 2009 as Bhargavaea beijingensis comb. nov. and Bhargavaea ginsengi comb. nov. and emended description of the genus Bhargavaea.	Verma P, Pandey PK, Gupta AK, Seong CN, Park SC, Choe HN, Baik KS, Patole MS, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.034850-0	2011	*
Phylogeny	Bacillus beijingensis sp. nov. and Bacillus ginsengi sp. nov., isolated from ginseng root.	Qiu F, Zhang X, Liu L, Sun L, Schumann P, Song W	Int J Syst Evol Microbiol	10.1099/ijs.0.65861-0	2009	*

References

#7856

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19037

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32659

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28870 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81228

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID362297.1 )

#28870

IJSEM 729 2009 ( DOI 10.1099/ijs.0.65861-0 , PubMed 19329597 )

* These data were automatically processed and therefore are not curated

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Bhargavaea beijingensis strain CGMCC 1.6762

Bhargavaea beijingensis strain CGMCC 1.6762

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