Bhargavaea ginsengi (DSM 19038, CGMCC 1.6763, ge14)

Name: Bhargavaea ginsengi (DSM 19038, CGMCC 1.6763, ge14)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12010

Type strain

Strain Designation ge14

Culture col. no. DSM 19038 CGMCC 1.6763 ge14

NCBI tax ID(s) 426757

Special Collections DSMZ Literature strains

History <- F. Qiu, College of Life Sci., Capital Normal Univ., Beijing , PR China; ge14

Links

Bhargavaea ginsengi ge14 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from Ginseng roots, internal tissue.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 362296

CGMCC 1.6763,DSM 19038

@ref 20215

Last LPSN update 2026-02-09 11:20:43

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Bhargavaea

Species Bhargavaea ginsengi

Full scientific name Bhargavaea ginsengi (Qiu et al. 2009) Verma et al. 2012

Synonyms (1)

Bacillus ginsengi

BacDive ID	Other strains from **Bhargavaea ginsengi** (1)	Type strain
156070	B. ginsengi CCUG 60262

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32659	positive	1.3 µm	1.1 µm	rod-shaped

Pigmentation

32659

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7857	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7857	positive	growth	30
32659	positive	growth	04-45
32659	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
32659	positive	optimum	7.5
32659	positive	growth	06-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

32659

Oxygen toleranceaerobe

Spore formation

32659

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32659	NaCl	positive	growth	<10 %

Murein

@ref	Murein short key	Type
7857	A11.33	A4alpha L-Lys-D-Glu

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32659	28644 ChEBI	2-oxopentanoate	+	carbon source
32659	30089 ChEBI	acetate	+	carbon source
32659	16449 ChEBI	alanine	+	carbon source
32659	22653 ChEBI	asparagine	+	carbon source
32659	4853 ChEBI	esculin	+	hydrolysis
32659	28757 ChEBI	fructose	+	carbon source
32659	5291 ChEBI	gelatin	+	carbon source
32659	29987 ChEBI	glutamate	+	carbon source
32659	17754 ChEBI	glycerol	+	carbon source
32659	28087 ChEBI	glycogen	+	carbon source
32659	17596 ChEBI	inosine	+	carbon source
32659	21217 ChEBI	L-alaninamide	+	carbon source
32659	25115 ChEBI	malate	+	carbon source
32659	37684 ChEBI	mannose	+	carbon source
32659	51850 ChEBI	methyl pyruvate	+	carbon source
32659	506227 ChEBI	N-acetylglucosamine	+	carbon source
32659	17632 ChEBI	nitrate	+	reduction
32659	17272 ChEBI	propionate	+	carbon source
32659	15361 ChEBI	pyruvate	+	carbon source
32659	17822 ChEBI	serine	+	carbon source
32659	30031 ChEBI	succinate	+	carbon source
32659	17748 ChEBI	thymidine	+	carbon source
32659	53423 ChEBI	tween 40	+	carbon source
32659	16704 ChEBI	uridine	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
32659	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
32659	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
32659	catalase	+	1.11.1.6
32659	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7857	Ginseng roots, internal tissue	Beijing	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF371375 (>99% sequence identity) for Bhargavaea from Microbeatlas

Aquatic Samples	40
Soil Samples	187
Animal Samples	47
Plant Samples	8
Total Samples	282

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7857	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2617270926 annotated assembly for Bhargavaea ginsengi CGMCC 1.6763	scaffold	GCA_900109165	426757.4	2617270926	426757	72.28

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7857	Bacillus ginsengi strain ge14 16S ribosomal RNA gene, partial sequence	EF371375	1512		426757

GC content

@ref	GC-content (mol%)	Method
7857	50.2	thermal denaturation, midpoint method (Tm)
7857	49.6	thermal denaturation, midpoint method (Tm)
32659	49.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bhargavaea ginsengi CGMCC 1.6763
NCBI: GCA_900109165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	83.30	no
125439	motility	BacteriaNetⓘ	yes	79.80	no
125439	gram_stain	BacteriaNetⓘ	variable	84.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	68.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bhargavaea ginsengi CGMCC 1.6763
NCBI: GCA_900109165.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.34	yes
125438	anaerobic	anaerobicⓘ	no	97.79	yes
125438	aerobic	aerobicⓘ	yes	80.52	no
125438	spore-forming	spore-formingⓘ	no	55.01	yes
125438	thermophilic	thermophileⓘ	no	91.89	no
125438	flagellated	motile2+ⓘ	no	70.94	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Bacillus beijingensis Qiu et al. 2009 and Bacillus ginsengi Qiu et al. 2009 as Bhargavaea beijingensis comb. nov. and Bhargavaea ginsengi comb. nov. and emended description of the genus Bhargavaea.	Verma P, Pandey PK, Gupta AK, Seong CN, Park SC, Choe HN, Baik KS, Patole MS, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.034850-0	2011
Phylogeny	Bhargavaea ullalensis sp. nov., isolated from coastal sand.	Glaeser SP, Arun AB, Rekha PD, Prabhu S, Busse HJ, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.045062-0	2012
Phylogeny	Bacillus beijingensis sp. nov. and Bacillus ginsengi sp. nov., isolated from ginseng root.	Qiu F, Zhang X, Liu L, Sun L, Schumann P, Song W	Int J Syst Evol Microbiol	10.1099/ijs.0.65861-0	2009

References

#7857	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19038
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28870	IJSEM 729 2009 ( DOI 10.1099/ijs.0.65861-0 , PubMed 19329597 )
#32659	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28870
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bhargavaea ginsengi (DSM 19038, CGMCC 1.6763, ge14)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900109165

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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