Name: Bhargavaea ginsengi ge14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12010

Type strain:

Species: Bhargavaea ginsengi

Strain Designation: ge14

Culture col. no.: DSM 19038, CGMCC 1.6763

Strain history: <- F. Qiu, College of Life Sci., Capital Normal Univ., Beijing , PR China; ge14

NCBI tax ID(s): 426757 (species)

SI-ID 362296

CGMCC 1.6763, DSM 19038

Special Collections

Other strains from Bhargavaea ginsengi

Section

Bhargavaea ginsengi ge14 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from Ginseng roots, internal tissue.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Bhargavaea*
	Species	**Bhargavaea ginsengi**
	Full Scientific Name (LPSN)	Bhargavaea ginsengi (Qiu et al. 2009) Verma et al. 2012

Synonym

Bacillus ginsengi

Information on morphological and physiological properties Morphology

[Ref.: #32659]	Gram stain	positive

[Ref.: #32659]	Cell length	1.3 µm

[Ref.: #32659]	Cell width	1.1 µm

[Ref.: #32659]	Cell shape	rod-shaped

[Ref.: #32659]	Motility	no

[Ref.: #32659]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7857]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #7857]

Culture medium growth

[Ref.: #7857]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7857]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7857]	growth	30 °C
[Ref.: #32659]	growth	04-45 °C
[Ref.: #32659]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #32659]			optimum	7.5
[Ref.: #32659]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32659]

Oxygen tolerance

aerobe

[Ref.: #32659]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32659]		NaCl		growth	<10	%

[Ref.: #7857]	Murein short key	A11.33
[Ref.: #7857]	Murein types	A4alpha L-Lys-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32659]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #32659]	acetate ChEBI	+	carbon source
[Ref.: #32659]	alanine ChEBI	+	carbon source
[Ref.: #32659]	asparagine ChEBI	+	carbon source
[Ref.: #32659]	esculin ChEBI	+	hydrolysis
[Ref.: #32659]	fructose ChEBI	+	carbon source
[Ref.: #32659]	gelatin ChEBI	+	carbon source
[Ref.: #32659]	glutamate ChEBI	+	carbon source
[Ref.: #32659]	glycerol ChEBI	+	carbon source
[Ref.: #32659]	glycogen ChEBI	+	carbon source
[Ref.: #32659]	inosine ChEBI	+	carbon source
[Ref.: #32659]	L-alaninamide ChEBI	+	carbon source
[Ref.: #32659]	malate ChEBI	+	carbon source
[Ref.: #32659]	mannose ChEBI	+	carbon source
[Ref.: #32659]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32659]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32659]	nitrate ChEBI	+	reduction
[Ref.: #32659]	propionate ChEBI	+	carbon source
[Ref.: #32659]	pyruvate ChEBI	+	carbon source
[Ref.: #32659]	serine ChEBI	+	carbon source
[Ref.: #32659]	succinate ChEBI	+	carbon source
[Ref.: #32659]	thymidine ChEBI	+	carbon source
[Ref.: #32659]	tween 40 ChEBI	+	carbon source
[Ref.: #32659]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #32659]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #32659]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32659]		catalase	+	1.11.1.6
[Ref.: #32659]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7857]	Sample type/isolated from	Ginseng roots, internal tissue
[Ref.: #7857]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #7857]	Country	China
[Ref.: #7857]	Country ISO 3 Code	CHN
[Ref.: #7857]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF371375 (>99% sequence identity) for Bhargavaea from Microbeatlas

Aquatic Samples	40
Soil Samples	187
Animal Samples	47
Plant Samples	8
Total Samples	282

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7857]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7857]	Bacillus ginsengi strain ge14 16S ribosomal RNA gene, partial sequence	EF371375	1512	GenBank ENA	426757 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bhargavaea ginsengi CGMCC 1.6763	GCA_900109165	scaffold	GenBank ENA	426757 tax ID	*
[Ref.: #66792]	Bhargavaea ginsengi strain CGMCC 1.6763	426757.4	wgs	PATRIC	426757 tax ID	*
[Ref.: #66792]	Bhargavaea ginsengi CGMCC 1.6763	2617270926	draft	JGI IMG/M	426757 tax ID	*

[Ref.: #7857]	GC-content	50.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #7857]	GC-content	49.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32659]	GC-content	49.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bhargavaea ginsengi CGMCC 1.6763 NCBI: GCA_900109165.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bhargavaea ginsengi CGMCC 1.6763 NCBI: GCA_900109165.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	84.34	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.794	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.519	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	55.008	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.891	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	70.939	yes

Availability in culture collections External links

[Ref.: #7857]

Culture collection no.

DSM 19038, CGMCC 1.6763

[Ref.: #81229]

SI-ID 362296

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bhargavaea ullalensis sp. nov., isolated from coastal sand.	Glaeser SP, Arun AB, Rekha PD, Prabhu S, Busse HJ, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.045062-0	2012	*
Phylogeny	Reclassification of Bacillus beijingensis Qiu et al. 2009 and Bacillus ginsengi Qiu et al. 2009 as Bhargavaea beijingensis comb. nov. and Bhargavaea ginsengi comb. nov. and emended description of the genus Bhargavaea.	Verma P, Pandey PK, Gupta AK, Seong CN, Park SC, Choe HN, Baik KS, Patole MS, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.034850-0	2011	*
Phylogeny	Bacillus beijingensis sp. nov. and Bacillus ginsengi sp. nov., isolated from ginseng root.	Qiu F, Zhang X, Liu L, Sun L, Schumann P, Song W	Int J Syst Evol Microbiol	10.1099/ijs.0.65861-0	2009	*

References

#7857

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19038

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32659

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28870 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81229

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID362296.1 )

#28870

IJSEM 729 2009 ( DOI 10.1099/ijs.0.65861-0 , PubMed 19329597 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Bhargavaea ginsengi in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Bhargavaea ginsengi CGMCC 1.6763

Bhargavaea ginsengi CGMCC 1.6763

Change proposal

Change proposal