Name: Planococcus stackebrandtii K22-03
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11972

Type strain:

Species: Planococcus stackebrandtii

Strain Designation: K22-03

Culture col. no.: DSM 16419, JCM 12481, MTCC 6226

Strain history: S. Mayilraj K22-03.

NCBI tax ID(s): 253160 (species)

Section

Planococcus stackebrandtii K22-03 is an aerobe, Gram-positive, motile bacterium that was isolated from soil, cold desert of Himalayas.

coccus-shaped
Gram-positive
motile
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Planococcus*
	Species	**Planococcus stackebrandtii**
	Full Scientific Name (PNU)	Planococcus stackebrandtii Mayilraj et al. 2005

Synonym

Planomicrobium stackebrandtii

Information on morphological and physiological properties Morphology

[Ref.: #31317]	Gram stain	positive
[Ref.: #31317]	Cell shape	coccus-shaped
[Ref.: #31317]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31317]	growth	15-30 °C
[Ref.: #31317]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #31317]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31317]			optimum	8.3
[Ref.: #31317]			growth	5.6-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31317]

Oxygen tolerance

aerobe

[Ref.: #31317]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31317]		NaCl		growth	<8	%

[Ref.: #31317]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-7, MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31317]	fructose ChEBI	+	carbon source
[Ref.: #31317]	galactose ChEBI	+	carbon source
[Ref.: #31317]	gelatin ChEBI	+	carbon source
[Ref.: #31317]	lactose ChEBI	+	carbon source
[Ref.: #31317]	raffinose ChEBI	+	carbon source
[Ref.: #31317]	sucrose ChEBI	+	carbon source
[Ref.: #31317]	tween 20 ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31317]		catalase	+	1.11.1.6
[Ref.: #31317]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6440]	Sample type/isolated from	soil, cold desert of Himalayas
[Ref.: #6440]	Country	India
[Ref.: #6440]	Country ISO 3 Code	IND
[Ref.: #6440]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil, cold desert
[Ref.: #67770]	Geographic location (country and/or sea, region)	Himalaya
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6440]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6440]	Planococcus stackebrandtii strain K22-03 16S ribosomal RNA gene, partial sequence	AY437845	1464	ENA	253160 tax ID
[Ref.: #67770]	Planomicrobium stackebrandtii gene for 16S ribosomal RNA, partial sequence, strain: JCM 12481	LC076757	1473	ENA	253160 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planomicrobium stackebrandtii DSM 16419	2928307406	draft	JGI IMG/M	253160 tax ID	*

[Ref.: #6440]

GC-content

40 mol%

Availability in culture collections External links

[Ref.: #6440]

Culture collection no.

DSM 16419, JCM 12481, MTCC 6226

[Ref.: #20218]

Associated Passport(s) in StrainInfo

382835, 382836, 382838

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planomicrobium flavidum sp. nov., isolated from a marine solar saltern, and transfer of Planococcus stackebrandtii Mayilraj et al. 2005 to the genus Planomicrobium as Planomicrobium stackebrandtii comb. nov.	Jung YT, Kang SJ, Oh TK, Yoon JH, Kim BH	Int J Syst Evol Microbiol	10.1099/ijs.0.009191-0	2009	*
Phylogeny	Planococcus stackebrandtii sp. nov., isolated from a cold desert of the Himalayas, India.	Mayilraj S, Prasad GS, Suresh K, Saini HS, Shivaji S, Chakrabarti T	Int J Syst Evol Microbiol	10.1099/ijs.0.63290-0	2005	*

References

#6440

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16419

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31317

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27632 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#27632

IJSEM 91 2005 ( DOI 10.1099/ijs.0.63290-0 , PubMed 15653859 )

* These data were automatically processed and therefore are not curated

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