Name: Planococcus koreensis JG-07
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11971

Type strain:

Species: Planococcus koreensis

Strain Designation: JG-07

Culture col. no.: DSM 15895, CIP 107134, JCM 10704, KCTC 3684, CGMCC 1.3646, KCTC 3684.

Strain history: CIP <- 2001, JCM <- J. H. Yoon, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Taejon, South Korea: strain JG-07

NCBI tax ID(s): 112331 (species)

SI-ID 100866

JCM 10704, KCTC 3684, CIP 107134, DSM 15895

Special Collections

Section

Planococcus koreensis JG-07 is an aerobe, rod-shaped bacterium that was isolated from jeotgal .

rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Planococcus*
	Species	**Planococcus koreensis**
	Full Scientific Name (LPSN)	Planococcus koreensis (Yoon et al. 2001) Gupta and Patel 2020

Synonym

Planomicrobium koreense

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	variable
[Ref.: #120469]	Gram stain	negative

[Ref.: #120469]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	coccus-shaped

[Ref.: #120469]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6173]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6173]

Culture medium growth

[Ref.: #6173]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6173]

Culture medium composition

expand / minimize

[Ref.: #33628]

Culture medium

Marine agar (MA)

[Ref.: #33628]

Culture medium growth

[Ref.: #33628]

Culture medium composition

expand / minimize

[Ref.: #120469]

Culture medium

CIP Medium 13

[Ref.: #120469]

Culture medium growth

[Ref.: #120469]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6173]		growth	28 °C
[Ref.: #33628]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #67771]		growth	20-30 °C
[Ref.: #120469]		growth	10-41 °C
[Ref.: #120469]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #120469]	Oxygen tolerance	facultative anaerobe

	Salt	Tested relation		Salt conc.
[Ref.: #120469]	NaCl		growth	0-4	%
[Ref.: #120469]	NaCl	no	growth	6	%
[Ref.: #120469]	NaCl	no	growth	8	%
[Ref.: #120469]	NaCl	no	growth	10	%

[Ref.: #6173]	Murein short key	A11.33
[Ref.: #6173]	Murein types	A4alpha L-Lys-D-Glu

[Ref.: #67770]	Observation	quinones: MK-8, MK-7, MK-6
[Ref.: #67771]	Observation	quinones: MK-8, MK-7, MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120469]	hippurate ChEBI	-	hydrolysis
[Ref.: #120469]	nitrate ChEBI	+	reduction
[Ref.: #120469]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120469]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #120469]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #120469]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120469]	amylase	-
[Ref.: #120469]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120469]	caseinase	+	3.4.21.50
[Ref.: #120469]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #120469]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120469]	gelatinase	+
[Ref.: #120469]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120469]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120469]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120469]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120469]	oxidase	+
[Ref.: #120469]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120469]	tryptophan deaminase	-
[Ref.: #120469]	tween esterase	-
[Ref.: #120469]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120469]	2022	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120469]	10092	-	+	+	-	-	+	+	+	+	+	-	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6173]	Sample type/isolated from	jeotgal (korean traditional fermented seafood)
[Ref.: #6173]	Geographic location (country and/or sea, region)	Korea
[Ref.: #6173]	Country	Republic of Korea
[Ref.: #6173]	Country ISO 3 Code	KOR
[Ref.: #6173]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Jeotgal, Korean traditional fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From Jeotgal, Korean traditional fermented seafood
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120469]	Sample type/isolated from	Food, Jeotgal, korean traditional fermented seafood
[Ref.: #120469]	Country	Republic of Korea
[Ref.: #120469]	Country ISO 3 Code	KOR
[Ref.: #120469]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6173]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120469]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6173]	Planococcus sp. JG07 16S ribosomal RNA gene, partial sequence	AF144750	1506	GenBank ENA	112331 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planococcus koreensis DSM 15895	GCA_014202615	contig	GenBank ENA	112331 tax ID	*
[Ref.: #66792]	Planomicrobium koreense strain DSM 15895	112331.4	wgs	PATRIC	112331 tax ID	*
[Ref.: #66792]	Planomicrobium koreense DSM 15895	2861582252	draft	JGI IMG/M	112331 tax ID	*

[Ref.: #6173]	GC-content	47 mol%
[Ref.: #67770]	GC-content	47 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	47.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planomicrobium koreense strain DSM 15895 PATRIC: 112331.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	85	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planomicrobium koreense strain DSM 15895 PATRIC: 112331.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	75.42	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.569	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	55.73	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.442	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.878	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	56.537	no

Availability in culture collections External links

[Ref.: #6173]

Culture collection no.

DSM 15895, CIP 107134, JCM 10704, KCTC 3684, CGMCC 1.3646, KCTC 3684.

[Ref.: #81182]	SI-ID 100866	*
[Ref.: #81183]	SI-ID 312120	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planomicrobium soli sp. nov., isolated from soil.	Luo X, Zhang J, Li D, Xin Y, Xin D, Fan L	Int J Syst Evol Microbiol	10.1099/ijs.0.055426-0	2014	*

References

#6173

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15895

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33628 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81182

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100866.1 )

#81183

#120469 Collection of Institut Pasteur ; Curators of the CIP; CIP 107134
* These data were automatically processed and therefore are not curated

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Search for species Planococcus koreensis in external resources:
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Planomicrobium koreense strain DSM 15895

Planomicrobium koreense strain DSM 15895

Change proposal

Change proposal