Strain identifier
BacDive ID: 11972
Type strain: 
Species: Planococcus stackebrandtii
Strain Designation: K22-03
Strain history: S. Mayilraj K22-03.
NCBI tax ID(s): 253160 (species)
version 6 (current version)
General
@ref: 6440
BacDive-ID: 11972
DSM-Number: 16419
keywords: motile, Gram-positive, mesophilic, aerobe, Bacteria, 16S sequence, coccus-shaped
description: Planococcus stackebrandtii K22-03 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil, cold desert of Himalayas.
NCBI tax id
- NCBI tax id: 253160
- Matching level: species
strain history
doi: 10.13145/bacdive11972.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/firmicutes
- domain: Bacteria
- phylum: Firmicutes
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Planococcus
- species: Planococcus stackebrandtii
- full scientific name: Planococcus stackebrandtii Mayilraj et al. 2005
synonyms
- @ref: 20215
- synonym: Planomicrobium stackebrandtii
@ref: 6440
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Planococcaceae
genus: Planomicrobium
species: Planomicrobium stackebrandtii
full scientific name: Planomicrobium stackebrandtii (Mayilraj et al. 2005) Jung et al. 2009
strain designation: K22-03
type strain: yes
Morphology
cell morphology
- @ref: 31317
- gram stain: positive
- cell shape: coccus-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 6440
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://bacmedia.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6440 | positive | growth | 25 | mesophilic |
| 31317 | positive | growth | 15-30 | |
| 31317 | positive | optimum | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31317 | positive | growth | 5.6-11 |
| 31317 | positive | optimum | 8.3 |
Physiology and metabolism
oxygen tolerance
- @ref: 31317
- oxygen tolerance: aerobe
spore formation
- @ref: 31317
- spore formation: no
halophily
- @ref: 31317
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <8 %
observation
| @ref | observation |
|---|---|
| 31317 | aggregates in clumps |
| 67770 | quinones: MK-7, MK-8 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31317 | 28757 | fructose | + | carbon source |
| 31317 | 28260 | galactose | + | carbon source |
| 31317 | 5291 | gelatin | + | carbon source |
| 31317 | 17716 | lactose | + | carbon source |
| 31317 | 16634 | raffinose | + | carbon source |
| 31317 | 17992 | sucrose | + | carbon source |
| 31317 | 53424 | tween 20 | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31317 | catalase | + | 1.11.1.6 |
| 31317 | gelatinase | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 6440 | soil, cold desert of Himalayas | India | IND | Asia | |
| 67770 | Soil, cold desert | India | IND | Asia | Himalaya |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 6440
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 6440 | Planococcus stackebrandtii strain K22-03 16S ribosomal RNA gene, partial sequence | AY437845 | 1464 | ena | 253160 |
| 67770 | Planomicrobium stackebrandtii gene for 16S ribosomal RNA, partial sequence, strain: JCM 12481 | LC076757 | 1473 | ena | 253160 |
Genome sequences
- @ref: 66792
- description: Planomicrobium stackebrandtii DSM 16419
- accession: 2928307406
- assembly level: draft
- database: img
- NCBI tax ID: 253160
GC content
- @ref: 6440
- GC-content: 40
External links
@ref: 6440
culture collection no.: DSM 16419, JCM 12481, MTCC 6226
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/382835 |
| 20218 | http://www.straininfo.net/strains/382836 |
| 20218 | http://www.straininfo.net/strains/382838 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 6440 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16419) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16419 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 27632 | 10.1099/ijs.0.63290-0 | 15653859 | |||||
| 31317 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 27632 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |