Strain identifier

BacDive ID: 11972

Type strain: Yes

Species: Planococcus stackebrandtii

Strain Designation: K22-03

Strain history: S. Mayilraj K22-03.

NCBI tax ID(s): 253160 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6440

BacDive-ID: 11972

DSM-Number: 16419

keywords: motile, Gram-positive, mesophilic, aerobe, Bacteria, 16S sequence, coccus-shaped

description: Planococcus stackebrandtii K22-03 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil, cold desert of Himalayas.

NCBI tax id

  • NCBI tax id: 253160
  • Matching level: species

strain history

doi: 10.13145/bacdive11972.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Planococcus
  • species: Planococcus stackebrandtii
  • full scientific name: Planococcus stackebrandtii Mayilraj et al. 2005
  • synonyms

    • @ref: 20215
    • synonym: Planomicrobium stackebrandtii

@ref: 6440

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Planococcaceae

genus: Planomicrobium

species: Planomicrobium stackebrandtii

full scientific name: Planomicrobium stackebrandtii (Mayilraj et al. 2005) Jung et al. 2009

strain designation: K22-03

type strain: yes

Morphology

cell morphology

  • @ref: 31317
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 6440
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6440positivegrowth25mesophilic
31317positivegrowth15-30
31317positiveoptimum25mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepH
31317positivegrowth5.6-11
31317positiveoptimum8.3

Physiology and metabolism

oxygen tolerance

  • @ref: 31317
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31317
  • spore formation: no

halophily

  • @ref: 31317
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <8 %

observation

@refobservation
31317aggregates in clumps
67770quinones: MK-7, MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3131728757fructose+carbon source
3131728260galactose+carbon source
313175291gelatin+carbon source
3131717716lactose+carbon source
3131716634raffinose+carbon source
3131717992sucrose+carbon source
3131753424tween 20+carbon source

enzymes

@refvalueactivityec
31317catalase+1.11.1.6
31317gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
6440soil, cold desert of HimalayasIndiaINDAsia
67770Soil, cold desertIndiaINDAsiaHimalaya

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 6440
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
6440Planococcus stackebrandtii strain K22-03 16S ribosomal RNA gene, partial sequenceAY4378451464ena253160
67770Planomicrobium stackebrandtii gene for 16S ribosomal RNA, partial sequence, strain: JCM 12481LC0767571473ena253160

Genome sequences

  • @ref: 66792
  • description: Planomicrobium stackebrandtii DSM 16419
  • accession: 2928307406
  • assembly level: draft
  • database: img
  • NCBI tax ID: 253160

GC content

  • @ref: 6440
  • GC-content: 40

External links

@ref: 6440

culture collection no.: DSM 16419, JCM 12481, MTCC 6226

straininfo link

@refpassport
20218http://www.straininfo.net/strains/382835
20218http://www.straininfo.net/strains/382836
20218http://www.straininfo.net/strains/382838

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
6440Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16419)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16419
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2763210.1099/ijs.0.63290-015653859
31317Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604127632
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/