Strain identifier

BacDive ID: 11972

Type strain: Yes

Species: Planococcus stackebrandtii

Strain Designation: K22-03

Strain history: S. Mayilraj K22-03.

NCBI tax ID(s): 253160 (species)

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General

@ref: 6440

BacDive-ID: 11972

DSM-Number: 16419

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, motile, coccus-shaped

description: Planococcus stackebrandtii K22-03 is an aerobe, Gram-positive, motile bacterium that was isolated from soil, cold desert of Himalayas.

NCBI tax id

  • NCBI tax id: 253160
  • Matching level: species

strain history

@refhistory
6440<- S. Mayilraj; K22-03
67770S. Mayilraj K22-03.

doi: 10.13145/bacdive11972.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Planococcus
  • species: Planococcus stackebrandtii
  • full scientific name: Planococcus stackebrandtii Mayilraj et al. 2005

  • synonyms

    • @ref: 20215
    • synonym: Planomicrobium stackebrandtii

@ref: 6440

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Planococcaceae

genus: Planomicrobium

species: Planomicrobium stackebrandtii

full scientific name: Planomicrobium stackebrandtii (Mayilraj et al. 2005) Jung et al. 2009

strain designation: K22-03

type strain: yes

Morphology

cell morphology

  • @ref: 31317
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31317positivegrowth15-30
31317positiveoptimum25mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
31317positivegrowth5.6-11alkaliphile
31317positiveoptimum8.3

Physiology and metabolism

oxygen tolerance

  • @ref: 31317
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31317
  • spore formation: no

halophily

  • @ref: 31317
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <8 %

observation

@refobservation
31317aggregates in clumps
67770quinones: MK-7, MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3131728757fructose+carbon source
3131728260galactose+carbon source
313175291gelatin+carbon source
3131717716lactose+carbon source
3131716634raffinose+carbon source
3131717992sucrose+carbon source
3131753424tween 20+carbon source

enzymes

@refvalueactivityec
31317catalase+1.11.1.6
31317gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
6440soil, cold desert of HimalayasIndiaINDAsia
67770Soil, cold desertIndiaINDAsiaHimalaya

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 6440
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
6440Planococcus stackebrandtii strain K22-03 16S ribosomal RNA gene, partial sequenceAY4378451464ena253160
67770Planomicrobium stackebrandtii gene for 16S ribosomal RNA, partial sequence, strain: JCM 12481LC0767571473ena253160

Genome sequences

  • @ref: 66792
  • description: Planomicrobium stackebrandtii DSM 16419
  • accession: 2928307406
  • assembly level: draft
  • database: img
  • NCBI tax ID: 253160

GC content

  • @ref: 6440
  • GC-content: 40

External links

@ref: 6440

culture collection no.: DSM 16419, JCM 12481, MTCC 6226

straininfo link

  • @ref: 81184
  • straininfo: 135136

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15653859Planococcus stackebrandtii sp. nov., isolated from a cold desert of the Himalayas, India.Mayilraj S, Prasad GS, Suresh K, Saini HS, Shivaji S, Chakrabarti TInt J Syst Evol Microbiol10.1099/ijs.0.63290-02005Bacterial Typing Techniques, *Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Desert Climate, Gram-Positive Cocci/*classification/genetics/growth & development/isolation & purification, India, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny19628589Planomicrobium flavidum sp. nov., isolated from a marine solar saltern, and transfer of Planococcus stackebrandtii Mayilraj et al. 2005 to the genus Planomicrobium as Planomicrobium stackebrandtii comb. nov.Jung YT, Kang SJ, Oh TK, Yoon JH, Kim BHInt J Syst Evol Microbiol10.1099/ijs.0.009191-02009Bacillales/*classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6440Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16419)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16419
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31317Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2763228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
81184Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID135136.1StrainInfo: A central database for resolving microbial strain identifiers