Strain identifier
BacDive ID: 11972
Type strain:
Species: Planococcus stackebrandtii
Strain Designation: K22-03
Strain history: S. Mayilraj K22-03.
NCBI tax ID(s): 253160 (species)
General
@ref: 6440
BacDive-ID: 11972
DSM-Number: 16419
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, motile, coccus-shaped
description: Planococcus stackebrandtii K22-03 is an aerobe, Gram-positive, motile bacterium that was isolated from soil, cold desert of Himalayas.
NCBI tax id
- NCBI tax id: 253160
- Matching level: species
strain history
@ref | history |
---|---|
6440 | <- S. Mayilraj; K22-03 |
67770 | S. Mayilraj K22-03. |
doi: 10.13145/bacdive11972.20230509.8
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Planococcus
- species: Planococcus stackebrandtii
- full scientific name: Planococcus stackebrandtii Mayilraj et al. 2005
synonyms
- @ref: 20215
- synonym: Planomicrobium stackebrandtii
@ref: 6440
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Planococcaceae
genus: Planomicrobium
species: Planomicrobium stackebrandtii
full scientific name: Planomicrobium stackebrandtii (Mayilraj et al. 2005) Jung et al. 2009
strain designation: K22-03
type strain: yes
Morphology
cell morphology
- @ref: 31317
- gram stain: positive
- cell shape: coccus-shaped
- motility: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
31317 | positive | growth | 15-30 | |
31317 | positive | optimum | 25 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31317 | positive | growth | 5.6-11 | alkaliphile |
31317 | positive | optimum | 8.3 |
Physiology and metabolism
oxygen tolerance
- @ref: 31317
- oxygen tolerance: aerobe
spore formation
- @ref: 31317
- spore formation: no
halophily
- @ref: 31317
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <8 %
observation
@ref | observation |
---|---|
31317 | aggregates in clumps |
67770 | quinones: MK-7, MK-8 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31317 | 28757 | fructose | + | carbon source |
31317 | 28260 | galactose | + | carbon source |
31317 | 5291 | gelatin | + | carbon source |
31317 | 17716 | lactose | + | carbon source |
31317 | 16634 | raffinose | + | carbon source |
31317 | 17992 | sucrose | + | carbon source |
31317 | 53424 | tween 20 | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31317 | catalase | + | 1.11.1.6 |
31317 | gelatinase | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location |
---|---|---|---|---|---|
6440 | soil, cold desert of Himalayas | India | IND | Asia | |
67770 | Soil, cold desert | India | IND | Asia | Himalaya |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Desert |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 6440
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
6440 | Planococcus stackebrandtii strain K22-03 16S ribosomal RNA gene, partial sequence | AY437845 | 1464 | ena | 253160 |
67770 | Planomicrobium stackebrandtii gene for 16S ribosomal RNA, partial sequence, strain: JCM 12481 | LC076757 | 1473 | ena | 253160 |
Genome sequences
- @ref: 66792
- description: Planomicrobium stackebrandtii DSM 16419
- accession: 2928307406
- assembly level: draft
- database: img
- NCBI tax ID: 253160
GC content
- @ref: 6440
- GC-content: 40
External links
@ref: 6440
culture collection no.: DSM 16419, JCM 12481, MTCC 6226
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/382835 |
20218 | http://www.straininfo.net/strains/382836 |
20218 | http://www.straininfo.net/strains/382838 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15653859 | Planococcus stackebrandtii sp. nov., isolated from a cold desert of the Himalayas, India. | Mayilraj S, Prasad GS, Suresh K, Saini HS, Shivaji S, Chakrabarti T | Int J Syst Evol Microbiol | 10.1099/ijs.0.63290-0 | 2005 | Bacterial Typing Techniques, *Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Desert Climate, Gram-Positive Cocci/*classification/genetics/growth & development/isolation & purification, India, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
Phylogeny | 19628589 | Planomicrobium flavidum sp. nov., isolated from a marine solar saltern, and transfer of Planococcus stackebrandtii Mayilraj et al. 2005 to the genus Planomicrobium as Planomicrobium stackebrandtii comb. nov. | Jung YT, Kang SJ, Oh TK, Yoon JH, Kim BH | Int J Syst Evol Microbiol | 10.1099/ijs.0.009191-0 | 2009 | Bacillales/*classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
6440 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16419) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16419 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
27632 | 10.1099/ijs.0.63290-0 | 15653859 | |||||
31317 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 27632 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |