Name: Planococcus psychrophilus DSM 14507
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11969

Type strain:

Species: Planococcus psychrophilus

Culture col. no.: DSM 14507, MTCC 3812, CMS 53or, CIP 107727

Strain history: CIP <- 2002, S. Shivaji, CCMB, Hyderabad, India: strain CMS 53or

NCBI tax ID(s): 161361 (species)

SI-ID 93336

DSM 14507, CIP 107727

Section

Planococcus psychrophilus DSM 14507 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from cyanobacterial mat sample.

coccus-shaped
Gram-positive
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Planococcus*
	Species	**Planococcus psychrophilus**
	Full Scientific Name (LPSN)	Planococcus psychrophilus Reddy et al. 2002

Synonym

Planomicrobium psychrophilum

Information on morphological and physiological properties Morphology

[Ref.: #122027]	Gram stain	positive

[Ref.: #122027]	Cell shape	coccus-shaped

[Ref.: #122027]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5273]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #5273]

Culture medium growth

[Ref.: #5273]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5273]

Culture medium composition

expand / minimize

[Ref.: #40571]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #40571]

Culture medium growth

[Ref.: #40571]

Culture medium composition

expand / minimize

[Ref.: #122027]

Culture medium

CIP Medium 72

[Ref.: #122027]

Culture medium growth

[Ref.: #122027]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5273]		growth	25 °C
[Ref.: #40571]		growth	22 °C
[Ref.: #122027]		growth	22-30 °C
[Ref.: #122027]	no	growth	10 °C
[Ref.: #122027]	no	growth	37 °C
[Ref.: #122027]	no	growth	41 °C
[Ref.: #122027]	no	growth	45 °C

[Ref.: #5273]	Temperature range	mesophilic
[Ref.: #40571]	Temperature range	psychrophilic
[Ref.: #122027]	Temperature range	psychrophilic
[Ref.: #122027]	Temperature range	mesophilic
[Ref.: #122027]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122027]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122027]		NaCl		growth	0-10	%

[Ref.: #5273]	Murein short key	A11.33
[Ref.: #5273]	Murein types	A4alpha L-Lys-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122027]	hippurate ChEBI	-	hydrolysis
[Ref.: #122027]	nitrate ChEBI	+	reduction
[Ref.: #122027]	nitrite ChEBI	-	reduction
[Ref.: #122027]	tributyrin ChEBI	-	hydrolysis

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122027]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #122027]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #122027]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #122027]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122027]	amylase	-
[Ref.: #122027]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122027]	caseinase	+	3.4.21.50
[Ref.: #122027]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122027]	DNase	+/-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122027]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122027]	gelatinase	-
[Ref.: #122027]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122027]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122027]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #122027]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122027]	oxidase	-
[Ref.: #122027]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122027]	tryptophan deaminase	-
[Ref.: #122027]	tween esterase	-
[Ref.: #122027]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122027]	10604	-	-	+	+	-	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5273]	Sample type/isolated from	cyanobacterial mat sample
[Ref.: #5273]	Geographic location (country and/or sea, region)	McMurdo Dry Valleys
[Ref.: #5273]	Continent	Australia and Oceania

[Ref.: #122027]	Sample type/isolated from	Cyanobacterial material
[Ref.: #122027]	Country	Antarctica
[Ref.: #122027]	Country ISO 3 Code	ATA
[Ref.: #122027]	Continent	Antarctica
* marker position based on {}

Isolation sources categories

#Environmental	#Microbial community	#Microbial mat
#Host	#Microbial	#Bacteria

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5273]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122027]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5273]	Planococcus psychrophilus partial 16S rRNA gene, strain CMS 53or	AJ314746	1480	ENA	161361 tax ID

[Ref.: #5273]

GC-content

44.5 mol%

Availability in culture collections External links

[Ref.: #5273]

Culture collection no.

DSM 14507, MTCC 3812, CMS 53or, CIP 107727

[Ref.: #81180]

SI-ID 93336

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planomicrobium chinense sp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb. nov. and Planomicrobium alkanoclasticum comb. nov.	Dai X, Wang YN, Wang BJ, Liu SJ, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijs.0.63340-0	2005	*
Phylogeny	Planococcus stackebrandtii sp. nov., isolated from a cold desert of the Himalayas, India.	Mayilraj S, Prasad GS, Suresh K, Saini HS, Shivaji S, Chakrabarti T	Int J Syst Evol Microbiol	10.1099/ijs.0.63290-0	2005	*
Phylogeny	Planococcus antarcticus and Planococcus psychrophilus spp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica.	Reddy GS, Prakash JS, Vairamani M, Prabhakar S, Matsumoto GI, Shivaji S	Extremophiles	10.1007/s00792-001-0250-7	2002	*

References

#5273

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14507

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40571 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#81180

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID93336.1 )

#122027 Collection of Institut Pasteur ; Curators of the CIP; CIP 107727
* These data were automatically processed and therefore are not curated

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