Strain identifier

BacDive ID: 11969

Type strain: Yes

Species: Planococcus psychrophilus

Strain history: CIP <- 2002, S. Shivaji, CCMB, Hyderabad, India: strain CMS 53or

NCBI tax ID(s): 161361 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 5273

BacDive-ID: 11969

DSM-Number: 14507

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, coccus-shaped

description: Planococcus psychrophilus DSM 14507 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from cyanobacterial mat sample.

NCBI tax id

  • NCBI tax id: 161361
  • Matching level: species

strain history

@refhistory
5273<- S. Shivaji; CMS 53or
405712002, S. Shivaji, Hyderabad, India: strain CMS 53or
122027CIP <- 2002, S. Shivaji, CCMB, Hyderabad, India: strain CMS 53or

doi: 10.13145/bacdive11969.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Planococcus
  • species: Planococcus psychrophilus
  • full scientific name: Planococcus psychrophilus Reddy et al. 2002

  • synonyms

    • @ref: 20215
    • synonym: Planomicrobium psychrophilum

@ref: 5273

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Planococcus

species: Planococcus psychrophilus

full scientific name: Planococcus psychrophilus Reddy et al. 2002

type strain: yes

Morphology

cell morphology

  • @ref: 122027
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 122027

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5273TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40571MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122027CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
5273positivegrowth25mesophilic
40571positivegrowth22psychrophilic
122027positivegrowth22-30
122027nogrowth10psychrophilic
122027nogrowth37mesophilic
122027nogrowth41thermophilic
122027nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122027
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 122027
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

murein

  • @ref: 5273
  • murein short key: A11.33
  • type: A4alpha L-Lys-D-Glu

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
122027606565hippurate-hydrolysis
12202717632nitrate+reduction
12202716301nitrite-reduction
12202735020tributyrin-hydrolysis

antibiotic resistance

  • @ref: 122027
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 122027
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 122027
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
122027oxidase-
122027beta-galactosidase+3.2.1.23
122027alcohol dehydrogenase-1.1.1.1
122027gelatinase-
122027amylase-
122027DNase+/-
122027caseinase+3.4.21.50
122027catalase+1.11.1.6
122027tween esterase-
122027gamma-glutamyltransferase-2.3.2.2
122027lecithinase-
122027lipase-
122027lysine decarboxylase-4.1.1.18
122027ornithine decarboxylase-4.1.1.17
122027phenylalanine ammonia-lyase-4.3.1.24
122027tryptophan deaminase-
122027urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122027--++-+-------+-+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentcountryorigin.country
5273cyanobacterial mat sampleMcMurdo Dry ValleysAustralia and Oceania
122027Cyanobacterial materialAntarcticaAntarcticaATA

isolation source categories

Cat1Cat2Cat3
#Environmental#Microbial community#Microbial mat
#Host#Microbial#Bacteria

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
52731Risk group (German classification)
1220271Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5273
  • description: Planococcus psychrophilus partial 16S rRNA gene, strain CMS 53or
  • accession: AJ314746
  • length: 1480
  • database: ena
  • NCBI tax ID: 161361

GC content

  • @ref: 5273
  • GC-content: 44.5

External links

@ref: 5273

culture collection no.: DSM 14507, MTCC 3812, CMS 53or, CIP 107727

straininfo link

  • @ref: 81180
  • straininfo: 93336

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12072961Planococcus antarcticus and Planococcus psychrophilus spp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica.Reddy GS, Prakash JS, Vairamani M, Prabhakar S, Matsumoto GI, Shivaji SExtremophiles10.1007/s00792-001-0250-72002Antarctic Regions, Bacteria/classification/genetics/*isolation & purification, Base Sequence, Cyanobacteria/*isolation & purification, DNA Primers, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Water MicrobiologyEnzymology
Phylogeny15653859Planococcus stackebrandtii sp. nov., isolated from a cold desert of the Himalayas, India.Mayilraj S, Prasad GS, Suresh K, Saini HS, Shivaji S, Chakrabarti TInt J Syst Evol Microbiol10.1099/ijs.0.63290-02005Bacterial Typing Techniques, *Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Desert Climate, Gram-Positive Cocci/*classification/genetics/growth & development/isolation & purification, India, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny15774646Planomicrobium chinense sp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb. nov. and Planomicrobium alkanoclasticum comb. nov.Dai X, Wang YN, Wang BJ, Liu SJ, Zhou YGInt J Syst Evol Microbiol10.1099/ijs.0.63340-02005Base Sequence, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Gram-Positive Bacteria/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitle
5273Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14507)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14507
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
40571Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5195
68382Automatically annotated from API zym
81180Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID93336.1StrainInfo: A central database for resolving microbial strain identifiers
122027Curators of the CIPCollection of Institut Pasteur (CIP 107727)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107727