Planococcus mcmeekinii (DSM 13963, ATCC 700539, S23F2)

Name: Planococcus mcmeekinii (DSM 13963, ATCC 700539, S23F2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11968

Type strain

Strain Designation S23F2

Culture col. no. DSM 13963 ATCC 700539 S23F2 CIP 105673

NCBI tax ID(s) 71546

Special Collections DSMZ CIP

History <- J. Dodsworth, Dept. of Microbiol., Univ. of Washington 1998, K. Junge, School Oceanography, Univ. Washington, Seattle, USA: strain S23F2 CIP <- 1998, K. Junge, School Oceanography, Washington Univ., Seattle, Washington, USA: strain S23F2

Links

Planococcus mcmeekinii S23F2 is an obligate aerobe, Gram-positive, motile bacterium that was isolated from antarctic sea ice brine.

Gram-positive motile rod-shaped obligate aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 43990

ATCC 700539,CIP 105673,DSM 13963

@ref 20215

Last LPSN update 2026-02-09 11:20:43

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Planococcus

Species Planococcus mcmeekinii

Full scientific name Planococcus mcmeekinii Junge et al. 1998

Synonyms (1)

Planomicrobium mcmeekinii

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
120865	positive	rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5198	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
38569	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120865	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5198	positive	growth	28
38569	positive	growth	22
120865	positive	growth	10-37
120865	negative	growth	41
120865	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
120865	obligate aerobe
125439	obligate aerobe	96.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120865	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120865	4853 ChEBI	esculin	-	hydrolysis
120865	606565 ChEBI	hippurate	-	hydrolysis
120865	17632 ChEBI	nitrate	+	reduction
120865	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120865	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
120865	15688 ChEBI	acetoin	-
120865	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120865	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120865	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
120865	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120865	caseinase	-	3.4.21.50
120865	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
120865	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120865	gamma-glutamyltransferase	-	2.3.2.2
120865	gelatinase	-
120865	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
120865	lipase	-
68382	lipase (C 14)	-		from API zym
120865	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120865	ornithine decarboxylase	-	4.1.1.17
120865	oxidase	-
120865	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
120865	tryptophan deaminase	-
120865	tween esterase	-
120865	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120865	-	+	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Ice
#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Climate	#Cold	#Polar

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
5198	antarctic sea ice brine	2.5 km west from McMurdo Station
120865	Environment, Antarctic sea ice brine	McMurdo sound	Antarctica	ATA	Antarctica	1992

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5198	1	Risk group (German classification) According to TRBA 466
120865	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score	BV-BRC accession
66792	Planomicrobium mcmeekinii DSM 13963	complete	2913357338	71546	92.68
66792	Planomicrobium mcmeekinii strain DSM 13963	contig		71546	71.43	71546.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Planococcus mcmeekinii 16S ribosomal RNA gene, partial sequence	AF041791	1481		71546
20218	Planococcus mcmeekinii 16S-23S rRNA intergenic spacer region, partial sequence	AF228699	221		71546

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Planomicrobium mcmeekinii DSM 13963
IMG: 2913357338

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	80.30	no
125439	motility	BacteriaNetⓘ	yes	76.60	no
125439	gram_stain	BacteriaNetⓘ	variable	87.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Planomicrobium mcmeekinii strain DSM 13963
PATRIC: 71546.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.36	no
125438	anaerobic	anaerobicⓘ	no	96.87	no
125438	spore-forming	spore-formingⓘ	yes	58.18	no
125438	thermophilic	thermophileⓘ	no	93.10	yes
125438	aerobic	aerobicⓘ	yes	83.12	yes
125438	flagellated	motile2+ⓘ	yes	52.24	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Robust Demarcation of the Family Caryophanaceae (Planococcaceae) and Its Different Genera Including Three Novel Genera Based on Phylogenomics and Highly Specific Molecular Signatures.	Gupta RS, Patel S.	Front Microbiol	10.3389/fmicb.2019.02821	2019
Phylogeny	Planomicrobium soli sp. nov., isolated from soil.	Luo X, Zhang J, Li D, Xin Y, Xin D, Fan L	Int J Syst Evol Microbiol	10.1099/ijs.0.055426-0	2014

References

#5198	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13963
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38569	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#120865	Collection of Institut Pasteur ; Curators of the CIP; CIP 105673
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Planococcus mcmeekinii (DSM 13963, ATCC 700539, S23F2)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media